Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC10
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_02957
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_6 | 3270 | 4811 | + | 2.A.68.1.2 |
| TF | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_7 | 4998 | 6230 | - | HTH_3 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_8 | 6495 | 8645 | + | GH31_1 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_9 | 8664 | 10559 | + | GH13_14 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_10 | 10714 | 12660 | - | GH133 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_11 | 13095 | 14573 | + | GH77 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_12 | 14579 | 17023 | + | GT35 |
| NULL(UNKNOWN) | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_13 | 17087 | 18397 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_14 | 18460 | 18945 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_15 | 18960 | 21047 | + | 3.A.1.1.26 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_16 | 21050 | 21949 | + | 3.A.1.1.26 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395 | RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_17 | 21963 | 23045 | + | 3.A.1.1.26 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_6
Type: TC
Location: 3270 - 4811 (+)
Type: TC
Location: 3270 - 4811 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_7
Type: TF
Location: 4998 - 6230 (-)
Type: TF
Location: 4998 - 6230 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_8
Type: CAZyme
Location: 6495 - 8645 (+)
Type: CAZyme
Location: 6495 - 8645 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_9
Type: CAZyme
Location: 8664 - 10559 (+)
Type: CAZyme
Location: 8664 - 10559 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_10
Type: CAZyme
Location: 10714 - 12660 (-)
Type: CAZyme
Location: 10714 - 12660 (-)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_11
Type: CAZyme
Location: 13095 - 14573 (+)
Type: CAZyme
Location: 13095 - 14573 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_12
Type: CAZyme
Location: 14579 - 17023 (+)
Type: CAZyme
Location: 14579 - 17023 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_13
Type:
Location: 17087 - 18397 (+)
Type:
Location: 17087 - 18397 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_14
Type:
Location: 18460 - 18945 (+)
Type:
Location: 18460 - 18945 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_15
Type: TC
Location: 18960 - 21047 (+)
Type: TC
Location: 18960 - 21047 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_16
Type: TC
Location: 21050 - 21949 (+)
Type: TC
Location: 21050 - 21949 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_2395_17
Type: TC
Location: 21963 - 23045 (+)
Type: TC
Location: 21963 - 23045 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.