Cluster: RahmanSF_2018_SRR5963426_bin.13_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963426_bin.13
- CGC Family ID: CGCFAM_00126
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_89 | 103824 | 104786 | + | GT2 |
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_90 | 104802 | 105851 | + | GT2 |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_91 | 105765 | 107444 | - | DUF6020 |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_92 | 107462 | 109132 | - | DUF6020 |
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_93 | 109132 | 110091 | - | GT2 |
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_94 | 110088 | 110999 | - | GT2 |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_95 | 111114 | 113078 | - | DUF6541 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_96 | 113080 | 113820 | - | 3.A.1.103.4 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_97 | 113825 | 114715 | - | 3.A.1.103.1 |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_98 | 114697 | 115884 | - | Amino_oxidase | GLF | NAD_binding_8 |
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_99 | 115939 | 116751 | - | GT2 |
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_2228 | RahmanSF_2018_SRR5963426_bin.13_k141_2228_100 | 116744 | 117637 | - | GT2 |
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_89
Type: CAZyme
Location: 103824 - 104786 (+)
Type: CAZyme
Location: 103824 - 104786 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_90
Type: CAZyme
Location: 104802 - 105851 (+)
Type: CAZyme
Location: 104802 - 105851 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_91
Type: pfam
Location: 105765 - 107444 (-)
Type: pfam
Location: 105765 - 107444 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_92
Type: pfam
Location: 107462 - 109132 (-)
Type: pfam
Location: 107462 - 109132 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_93
Type: CAZyme
Location: 109132 - 110091 (-)
Type: CAZyme
Location: 109132 - 110091 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_94
Type: CAZyme
Location: 110088 - 110999 (-)
Type: CAZyme
Location: 110088 - 110999 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_95
Type: pfam
Location: 111114 - 113078 (-)
Type: pfam
Location: 111114 - 113078 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_96
Type: TC
Location: 113080 - 113820 (-)
Type: TC
Location: 113080 - 113820 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_97
Type: TC
Location: 113825 - 114715 (-)
Type: TC
Location: 113825 - 114715 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_98
Type: pfam
Location: 114697 - 115884 (-)
Type: pfam
Location: 114697 - 115884 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_99
Type: CAZyme
Location: 115939 - 116751 (-)
Type: CAZyme
Location: 115939 - 116751 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_2228_100
Type: CAZyme
Location: 116744 - 117637 (-)
Type: CAZyme
Location: 116744 - 117637 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Nanchangia
Species
Nanchangia sp900545825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.