Cluster: RahmanSF_2018_SRR5963426_bin.13_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963426_bin.13
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_118 | 141598 | 143370 | + | GH3 |
| NULL(UNKNOWN) | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_119 | 143380 | 144276 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_120 | 144487 | 144897 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_121 | 144937 | 146787 | + | 2.A.49.6.4 |
| peptidase | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_122 | 146836 | 147768 | + | S09.UNW |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_123 | 147870 | 149549 | - | 8.A.7.1.2 |
| STP | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_124 | 149703 | 150683 | + | PfkB |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_125 | 150693 | 152813 | + | 4.A.2.1.13 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_126 | 152918 | 153190 | + | 8.A.8.1.2 |
| TF | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_127 | 153349 | 154383 | - | LacI |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_128 | 154522 | 155691 | - | GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_1483 | RahmanSF_2018_SRR5963426_bin.13_k141_1483_129 | 155840 | 157279 | + | 2.A.1.1.26 |
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_118
Type: CAZyme
Location: 141598 - 143370 (+)
Type: CAZyme
Location: 141598 - 143370 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_119
Type:
Location: 143380 - 144276 (+)
Type:
Location: 143380 - 144276 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_120
Type:
Location: 144487 - 144897 (+)
Type:
Location: 144487 - 144897 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_121
Type: TC
Location: 144937 - 146787 (+)
Type: TC
Location: 144937 - 146787 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_122
Type: peptidase
Location: 146836 - 147768 (+)
Type: peptidase
Location: 146836 - 147768 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_123
Type: TC
Location: 147870 - 149549 (-)
Type: TC
Location: 147870 - 149549 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_124
Type: STP
Location: 149703 - 150683 (+)
Type: STP
Location: 149703 - 150683 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_125
Type: TC
Location: 150693 - 152813 (+)
Type: TC
Location: 150693 - 152813 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_126
Type: TC
Location: 152918 - 153190 (+)
Type: TC
Location: 152918 - 153190 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_127
Type: TF
Location: 153349 - 154383 (-)
Type: TF
Location: 153349 - 154383 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_128
Type: pfam
Location: 154522 - 155691 (-)
Type: pfam
Location: 154522 - 155691 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_1483_129
Type: TC
Location: 155840 - 157279 (+)
Type: TC
Location: 155840 - 157279 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Nanchangia
Species
Nanchangia sp900545825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.