Cluster: RahmanSF_2018_SRR5963426_bin.13_CGC24
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963426_bin.13
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_6 | 5997 | 6635 | + | 2.A.95.1.4 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_7 | 6632 | 7963 | - | 2.A.3.3.13 |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_8 | 8119 | 9684 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_9 | 9810 | 10679 | - | AP_endonuc_2 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_10 | 10704 | 12125 | - | 2.A.1.1.53 |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_11 | 12130 | 13131 | - | AP_endonuc_2 |
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_12 | 13154 | 14338 | - | GH179 |
| TF | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_13 | 14512 | 15510 | - | LacI |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_11956 | RahmanSF_2018_SRR5963426_bin.13_k141_11956_14 | 15514 | 17079 | - | 1.I.1.1.3 |
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_6
Type: TC
Location: 5997 - 6635 (+)
Type: TC
Location: 5997 - 6635 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_7
Type: TC
Location: 6632 - 7963 (-)
Type: TC
Location: 6632 - 7963 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_8
Type: pfam
Location: 8119 - 9684 (+)
Type: pfam
Location: 8119 - 9684 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_9
Type: pfam
Location: 9810 - 10679 (-)
Type: pfam
Location: 9810 - 10679 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_10
Type: TC
Location: 10704 - 12125 (-)
Type: TC
Location: 10704 - 12125 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_11
Type: pfam
Location: 12130 - 13131 (-)
Type: pfam
Location: 12130 - 13131 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_12
Type: CAZyme
Location: 13154 - 14338 (-)
Type: CAZyme
Location: 13154 - 14338 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_13
Type: TF
Location: 14512 - 15510 (-)
Type: TF
Location: 14512 - 15510 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_11956_14
Type: TC
Location: 15514 - 17079 (-)
Type: TC
Location: 15514 - 17079 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Nanchangia
Species
Nanchangia sp900545825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.