Cluster: RahmanSF_2018_SRR5963426_bin.13_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963426_bin.13
- CGC Family ID: CGCFAM_10465
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_4399 | RahmanSF_2018_SRR5963426_bin.13_k141_4399_142 | 159325 | 160086 | + | GT2 |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_4399 | RahmanSF_2018_SRR5963426_bin.13_k141_4399_143 | 160071 | 160436 | - | RbpA |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_4399 | RahmanSF_2018_SRR5963426_bin.13_k141_4399_144 | 160599 | 162134 | + | 2.A.3.3.22 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_4399 | RahmanSF_2018_SRR5963426_bin.13_k141_4399_145 | 162311 | 164242 | + | 2.A.40.3.1 |
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_4399_142
Type: CAZyme
Location: 159325 - 160086 (+)
Type: CAZyme
Location: 159325 - 160086 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_4399_143
Type: pfam
Location: 160071 - 160436 (-)
Type: pfam
Location: 160071 - 160436 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_4399_144
Type: TC
Location: 160599 - 162134 (+)
Type: TC
Location: 160599 - 162134 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_4399_145
Type: TC
Location: 162311 - 164242 (+)
Type: TC
Location: 162311 - 164242 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Nanchangia
Species
Nanchangia sp900545825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.