Cluster: RahmanSF_2018_SRR5963426_bin.13_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963426_bin.13
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_45 | 65920 | 73521 | - | CBM32 | CBM32 | GH20 | GH35 |
| STP | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_46 | 74326 | 74967 | - | Pribosyltran |
| pfam | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_47 | 75046 | 75531 | + | dCMP_cyt_deam_1 | MafB19-deam |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_48 | 75539 | 76405 | - | 3.A.1.24.5 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_49 | 76455 | 77141 | - | 3.A.1.24.5 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_50 | 77138 | 78163 | - | 3.A.1.24.1 |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_51 | 78328 | 79836 | - | 2.A.1.3.3 |
| TF | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_52 | 80062 | 81084 | - | LacI |
| TC | RahmanSF_2018_SRR5963426_bin.13_k141_3238 | RahmanSF_2018_SRR5963426_bin.13_k141_3238_53 | 81326 | 82927 | + | 2.A.1.1.26 |
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_45
Type: CAZyme
Location: 65920 - 73521 (-)
Type: CAZyme
Location: 65920 - 73521 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_46
Type: STP
Location: 74326 - 74967 (-)
Type: STP
Location: 74326 - 74967 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_47
Type: pfam
Location: 75046 - 75531 (+)
Type: pfam
Location: 75046 - 75531 (+)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_48
Type: TC
Location: 75539 - 76405 (-)
Type: TC
Location: 75539 - 76405 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_49
Type: TC
Location: 76455 - 77141 (-)
Type: TC
Location: 76455 - 77141 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_50
Type: TC
Location: 77138 - 78163 (-)
Type: TC
Location: 77138 - 78163 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_51
Type: TC
Location: 78328 - 79836 (-)
Type: TC
Location: 78328 - 79836 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_52
Type: TF
Location: 80062 - 81084 (-)
Type: TF
Location: 80062 - 81084 (-)
Gene ID: RahmanSF_2018_SRR5963426_bin.13_k141_3238_53
Type: TC
Location: 81326 - 82927 (+)
Type: TC
Location: 81326 - 82927 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Nanchangia
Species
Nanchangia sp900545825
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.