Cluster: RahmanSF_2018_SRR5963418_bin.7_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963418_bin.7
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_7968 | RahmanSF_2018_SRR5963418_bin.7_k141_7968_223 | 249193 | 250248 | - | GT4 |
| pfam | RahmanSF_2018_SRR5963418_bin.7_k141_7968 | RahmanSF_2018_SRR5963418_bin.7_k141_7968_224 | 250241 | 251449 | - | Wzy_C |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_7968 | RahmanSF_2018_SRR5963418_bin.7_k141_7968_225 | 251427 | 252596 | - | GT4 |
| pfam | RahmanSF_2018_SRR5963418_bin.7_k141_7968 | RahmanSF_2018_SRR5963418_bin.7_k141_7968_226 | 252630 | 253907 | - | Polysacc_synt | Polysacc_synt_3 |
| pfam | RahmanSF_2018_SRR5963418_bin.7_k141_7968 | RahmanSF_2018_SRR5963418_bin.7_k141_7968_227 | 253891 | 255600 | - | Asn_synthase | GATase_6 | GATase_7 |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_7968 | RahmanSF_2018_SRR5963418_bin.7_k141_7968_228 | 255663 | 256982 | - | 8.A.3.2.3 |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_7968 | RahmanSF_2018_SRR5963418_bin.7_k141_7968_229 | 257281 | 259404 | + | GH39 |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_7968 | RahmanSF_2018_SRR5963418_bin.7_k141_7968_230 | 259725 | 261092 | + | 2.A.66.1.32 |
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_7968_223
Type: CAZyme
Location: 249193 - 250248 (-)
Type: CAZyme
Location: 249193 - 250248 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_7968_224
Type: pfam
Location: 250241 - 251449 (-)
Type: pfam
Location: 250241 - 251449 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_7968_225
Type: CAZyme
Location: 251427 - 252596 (-)
Type: CAZyme
Location: 251427 - 252596 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_7968_226
Type: pfam
Location: 252630 - 253907 (-)
Type: pfam
Location: 252630 - 253907 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_7968_227
Type: pfam
Location: 253891 - 255600 (-)
Type: pfam
Location: 253891 - 255600 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_7968_228
Type: TC
Location: 255663 - 256982 (-)
Type: TC
Location: 255663 - 256982 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_7968_229
Type: CAZyme
Location: 257281 - 259404 (+)
Type: CAZyme
Location: 257281 - 259404 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_7968_230
Type: TC
Location: 259725 - 261092 (+)
Type: TC
Location: 259725 - 261092 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium_J
Species
Clostridium_J sp900548455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.