Cluster: RahmanSF_2018_SRR5963418_bin.7_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963418_bin.7
- CGC Family ID: CGCFAM_00550
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_36 | 40693 | 41733 | - | 4.D.2.1.5 |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_37 | 41717 | 42421 | - | CE4 |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_38 | 42422 | 43510 | - | GT28 |
| pfam | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_39 | 43705 | 45819 | + | Ceramidase_alk | Ceramidse_alk_C |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_40 | 45839 | 47233 | - | 2.A.66.1.25 |
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_36
Type: TC
Location: 40693 - 41733 (-)
Type: TC
Location: 40693 - 41733 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_37
Type: CAZyme
Location: 41717 - 42421 (-)
Type: CAZyme
Location: 41717 - 42421 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_38
Type: CAZyme
Location: 42422 - 43510 (-)
Type: CAZyme
Location: 42422 - 43510 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_39
Type: pfam
Location: 43705 - 45819 (+)
Type: pfam
Location: 43705 - 45819 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_40
Type: TC
Location: 45839 - 47233 (-)
Type: TC
Location: 45839 - 47233 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium_J
Species
Clostridium_J sp900548455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.