Cluster: RahmanSF_2018_SRR5963418_bin.7_CGC3
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963418_bin.7
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_10 | 9121 | 10797 | - | 3.A.1.135.5 |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_11 | 10799 | 12595 | - | 3.A.1.106.12 |
| TF | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_12 | 12782 | 13600 | + | MerR |
| STP | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_13 | 13627 | 14502 | - | Nitroreductase |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_14 | 14567 | 15688 | - | CE9 |
| sulfatase | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_15 | 15775 | 16500 | - | S1_9 |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_16 | 16601 | 17887 | - | 2.A.56.1.8 |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_17 | 17887 | 18378 | - | 2.A.56.1.8 |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_3585 | RahmanSF_2018_SRR5963418_bin.7_k141_3585_18 | 18403 | 19443 | - | 2.A.56.1.1 |
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_10
Type: TC
Location: 9121 - 10797 (-)
Type: TC
Location: 9121 - 10797 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_11
Type: TC
Location: 10799 - 12595 (-)
Type: TC
Location: 10799 - 12595 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_12
Type: TF
Location: 12782 - 13600 (+)
Type: TF
Location: 12782 - 13600 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_13
Type: STP
Location: 13627 - 14502 (-)
Type: STP
Location: 13627 - 14502 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_14
Type: CAZyme
Location: 14567 - 15688 (-)
Type: CAZyme
Location: 14567 - 15688 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_15
Type: sulfatase
Location: 15775 - 16500 (-)
Type: sulfatase
Location: 15775 - 16500 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_16
Type: TC
Location: 16601 - 17887 (-)
Type: TC
Location: 16601 - 17887 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_17
Type: TC
Location: 17887 - 18378 (-)
Type: TC
Location: 17887 - 18378 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_3585_18
Type: TC
Location: 18403 - 19443 (-)
Type: TC
Location: 18403 - 19443 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium_J
Species
Clostridium_J sp900548455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.