Cluster: RahmanSF_2018_SRR5963418_bin.7_CGC19
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963418_bin.7
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_15006 | RahmanSF_2018_SRR5963418_bin.7_k141_15006_20 | 21307 | 22845 | + | 2.A.25.1.5 |
| pfam | RahmanSF_2018_SRR5963418_bin.7_k141_15006 | RahmanSF_2018_SRR5963418_bin.7_k141_15006_21 | 22989 | 24401 | + | Polysacc_synt |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_15006 | RahmanSF_2018_SRR5963418_bin.7_k141_15006_22 | 24504 | 25625 | + | GT4 |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_15006 | RahmanSF_2018_SRR5963418_bin.7_k141_15006_23 | 25772 | 26908 | + | GT4 |
| NULL(UNKNOWN) | RahmanSF_2018_SRR5963418_bin.7_k141_15006 | RahmanSF_2018_SRR5963418_bin.7_k141_15006_24 | 26945 | 27721 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_15006 | RahmanSF_2018_SRR5963418_bin.7_k141_15006_25 | 27758 | 28909 | + | GT4 |
| peptidase | RahmanSF_2018_SRR5963418_bin.7_k141_15006 | RahmanSF_2018_SRR5963418_bin.7_k141_15006_26 | 29024 | 29806 | + | S54.UNW |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_15006 | RahmanSF_2018_SRR5963418_bin.7_k141_15006_27 | 29973 | 31379 | + | 2.A.66.1.45 |
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_15006_20
Type: TC
Location: 21307 - 22845 (+)
Type: TC
Location: 21307 - 22845 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_15006_21
Type: pfam
Location: 22989 - 24401 (+)
Type: pfam
Location: 22989 - 24401 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_15006_22
Type: CAZyme
Location: 24504 - 25625 (+)
Type: CAZyme
Location: 24504 - 25625 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_15006_23
Type: CAZyme
Location: 25772 - 26908 (+)
Type: CAZyme
Location: 25772 - 26908 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_15006_24
Type:
Location: 26945 - 27721 (+)
Type:
Location: 26945 - 27721 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_15006_25
Type: CAZyme
Location: 27758 - 28909 (+)
Type: CAZyme
Location: 27758 - 28909 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_15006_26
Type: peptidase
Location: 29024 - 29806 (+)
Type: peptidase
Location: 29024 - 29806 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_15006_27
Type: TC
Location: 29973 - 31379 (+)
Type: TC
Location: 29973 - 31379 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium_J
Species
Clostridium_J sp900548455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.