Cluster: RahmanSF_2018_SRR5963418_bin.7_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963418_bin.7
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_91 | 86567 | 87139 | + | GH23 |
| TF | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_92 | 87398 | 88363 | - | HTH_AraC |
| pfam | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_93 | 88457 | 89389 | - | Choline_kinase | APH |
| CAZyme | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_94 | 89626 | 90906 | + | GH109 |
| pfam | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_95 | 90913 | 92937 | + | NTP_transferase | APH |
| STP | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_96 | 93400 | 94752 | + | AAA |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_97 | 94850 | 96235 | + | 2.A.23.1.8 |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_98 | 96521 | 97909 | + | 2.A.25.1.3 |
| TC | RahmanSF_2018_SRR5963418_bin.7_k141_13836 | RahmanSF_2018_SRR5963418_bin.7_k141_13836_99 | 98263 | 99651 | + | 2.A.25.1.3 |
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_91
Type: CAZyme
Location: 86567 - 87139 (+)
Type: CAZyme
Location: 86567 - 87139 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_92
Type: TF
Location: 87398 - 88363 (-)
Type: TF
Location: 87398 - 88363 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_93
Type: pfam
Location: 88457 - 89389 (-)
Type: pfam
Location: 88457 - 89389 (-)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_94
Type: CAZyme
Location: 89626 - 90906 (+)
Type: CAZyme
Location: 89626 - 90906 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_95
Type: pfam
Location: 90913 - 92937 (+)
Type: pfam
Location: 90913 - 92937 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_96
Type: STP
Location: 93400 - 94752 (+)
Type: STP
Location: 93400 - 94752 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_97
Type: TC
Location: 94850 - 96235 (+)
Type: TC
Location: 94850 - 96235 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_98
Type: TC
Location: 96521 - 97909 (+)
Type: TC
Location: 96521 - 97909 (+)
Gene ID: RahmanSF_2018_SRR5963418_bin.7_k141_13836_99
Type: TC
Location: 98263 - 99651 (+)
Type: TC
Location: 98263 - 99651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium_J
Species
Clostridium_J sp900548455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.