Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_195 | 204820 | 205929 | + | 9.B.141.1.1 |
| STP | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_196 | 206019 | 207689 | + | HATPase_c |
| NULL(UNKNOWN) | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_197 | 207865 | 208209 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_198 | 208261 | 209553 | + | GT112 |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_199 | 209550 | 210728 | + | GT112 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_200 | 210796 | 214548 | + | 1.B.12.2.2 |
| STP | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_201 | 214597 | 214971 | + | Response_reg |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_202 | 215045 | 215674 | + | TehB | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_203 | 215780 | 218845 | + | 1.B.12.2.2 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_204 | 219005 | 219718 | - | adh_short | Epimerase | KR | adh_short_C2 | SDR |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_205 | 220016 | 221236 | + | 2.A.1.2.65 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_195
Type: TC
Location: 204820 - 205929 (+)
Type: TC
Location: 204820 - 205929 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_196
Type: STP
Location: 206019 - 207689 (+)
Type: STP
Location: 206019 - 207689 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_197
Type:
Location: 207865 - 208209 (+)
Type:
Location: 207865 - 208209 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_198
Type: CAZyme
Location: 208261 - 209553 (+)
Type: CAZyme
Location: 208261 - 209553 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_199
Type: CAZyme
Location: 209550 - 210728 (+)
Type: CAZyme
Location: 209550 - 210728 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_200
Type: TC
Location: 210796 - 214548 (+)
Type: TC
Location: 210796 - 214548 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_201
Type: STP
Location: 214597 - 214971 (+)
Type: STP
Location: 214597 - 214971 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_202
Type: pfam
Location: 215045 - 215674 (+)
Type: pfam
Location: 215045 - 215674 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_203
Type: TC
Location: 215780 - 218845 (+)
Type: TC
Location: 215780 - 218845 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_204
Type: pfam
Location: 219005 - 219718 (-)
Type: pfam
Location: 219005 - 219718 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_205
Type: TC
Location: 220016 - 221236 (+)
Type: TC
Location: 220016 - 221236 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.