Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC7
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_107 | 102339 | 103058 | + | CE4 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_108 | 103457 | 104035 | + | TrpP |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_109 | 104032 | 104871 | + | 3.A.1.32.3 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_110 | 104865 | 105677 | + | 3.A.1.33.1 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_111 | 105677 | 106336 | + | CbiQ |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_112 | 106622 | 108013 | + | 2.A.21.2.5 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_113 | 108119 | 109750 | + | Prismane |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_114 | 110335 | 112020 | + | 1.B.52.2.1 |
| STP | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_115 | 112080 | 113306 | + | EAL |
| STP | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_116 | 113349 | 114251 | + | CheW | Response_reg |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_12058 | RahmanSF_2018_SRR5963402_bin.6_k141_12058_117 | 114885 | 116924 | + | 1.B.52.2.2 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_107
Type: CAZyme
Location: 102339 - 103058 (+)
Type: CAZyme
Location: 102339 - 103058 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_108
Type: pfam
Location: 103457 - 104035 (+)
Type: pfam
Location: 103457 - 104035 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_109
Type: TC
Location: 104032 - 104871 (+)
Type: TC
Location: 104032 - 104871 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_110
Type: TC
Location: 104865 - 105677 (+)
Type: TC
Location: 104865 - 105677 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_111
Type: pfam
Location: 105677 - 106336 (+)
Type: pfam
Location: 105677 - 106336 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_112
Type: TC
Location: 106622 - 108013 (+)
Type: TC
Location: 106622 - 108013 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_113
Type: pfam
Location: 108119 - 109750 (+)
Type: pfam
Location: 108119 - 109750 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_114
Type: TC
Location: 110335 - 112020 (+)
Type: TC
Location: 110335 - 112020 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_115
Type: STP
Location: 112080 - 113306 (+)
Type: STP
Location: 112080 - 113306 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_116
Type: STP
Location: 113349 - 114251 (+)
Type: STP
Location: 113349 - 114251 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_12058_117
Type: TC
Location: 114885 - 116924 (+)
Type: TC
Location: 114885 - 116924 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.