Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_10977 | RahmanSF_2018_SRR5963402_bin.6_k141_10977_24 | 19999 | 21141 | - | GT28 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_10977 | RahmanSF_2018_SRR5963402_bin.6_k141_10977_25 | 21157 | 22257 | - | 2.A.103.1.3 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_10977 | RahmanSF_2018_SRR5963402_bin.6_k141_10977_26 | 22272 | 23627 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_10977 | RahmanSF_2018_SRR5963402_bin.6_k141_10977_27 | 23630 | 24613 | - | 9.B.146.1.6 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_10977_24
Type: CAZyme
Location: 19999 - 21141 (-)
Type: CAZyme
Location: 19999 - 21141 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_10977_25
Type: TC
Location: 21157 - 22257 (-)
Type: TC
Location: 21157 - 22257 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_10977_26
Type: pfam
Location: 22272 - 23627 (-)
Type: pfam
Location: 22272 - 23627 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_10977_27
Type: TC
Location: 23630 - 24613 (-)
Type: TC
Location: 23630 - 24613 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.