Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- CGC Family ID: CGCFAM_00465
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_1 | 2 | 979 | + | 2.A.6.3.3 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_2 | 1154 | 2209 | + | 8.A.59.4.1 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_3 | 2227 | 3318 | + | 8.A.59.4.2 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_4 | 3331 | 4014 | + | Asn_synthase | QueC |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_5 | 4011 | 4826 | + | 9.B.10.1.1 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_6 | 4925 | 5794 | + | YdjC |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_7 | 5787 | 6770 | + | 4.D.2.1.4 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_8 | 6808 | 7731 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_9 | 7738 | 9291 | + | GT83 |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_3157 | RahmanSF_2018_SRR5963402_bin.6_k141_3157_10 | 9307 | 10896 | + | GT83 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_1
Type: TC
Location: 2 - 979 (+)
Type: TC
Location: 2 - 979 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_2
Type: TC
Location: 1154 - 2209 (+)
Type: TC
Location: 1154 - 2209 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_3
Type: TC
Location: 2227 - 3318 (+)
Type: TC
Location: 2227 - 3318 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_4
Type: pfam
Location: 3331 - 4014 (+)
Type: pfam
Location: 3331 - 4014 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_5
Type: TC
Location: 4011 - 4826 (+)
Type: TC
Location: 4011 - 4826 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_6
Type: pfam
Location: 4925 - 5794 (+)
Type: pfam
Location: 4925 - 5794 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_7
Type: TC
Location: 5787 - 6770 (+)
Type: TC
Location: 5787 - 6770 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_8
Type: pfam
Location: 6808 - 7731 (+)
Type: pfam
Location: 6808 - 7731 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_9
Type: CAZyme
Location: 7738 - 9291 (+)
Type: CAZyme
Location: 7738 - 9291 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_3157_10
Type: CAZyme
Location: 9307 - 10896 (+)
Type: CAZyme
Location: 9307 - 10896 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.