Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC24
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- CGC Family ID: CGCFAM_00737
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_37 | 39858 | 40415 | - | GH23 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_38 | 40580 | 41887 | + | Lar_N | LarA_C |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_39 | 41954 | 44152 | - | 3.A.7.7.1 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_37
Type: CAZyme
Location: 39858 - 40415 (-)
Type: CAZyme
Location: 39858 - 40415 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_38
Type: pfam
Location: 40580 - 41887 (+)
Type: pfam
Location: 40580 - 41887 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_39
Type: TC
Location: 41954 - 44152 (-)
Type: TC
Location: 41954 - 44152 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.