Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC23
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_4 | 2563 | 4206 | - | 2.A.66.2.14 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_5 | 4235 | 5272 | - | tRNA-synt_1c |
| peptidase | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_6 | 5257 | 6393 | - | M20.UPB |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_7 | 6427 | 7260 | - | 1.B.52.2.1 |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_8 | 7457 | 9073 | + | GH26 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_9 | 9139 | 10353 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_10 | 10476 | 12029 | + | GH26 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_11 | 12132 | 13565 | + | SSF |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_12 | 13562 | 13984 | + | HutP |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_25707 | RahmanSF_2018_SRR5963402_bin.6_k141_25707_13 | 14186 | 15247 | + | 8.A.59.4.2 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_4
Type: TC
Location: 2563 - 4206 (-)
Type: TC
Location: 2563 - 4206 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_5
Type: pfam
Location: 4235 - 5272 (-)
Type: pfam
Location: 4235 - 5272 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_6
Type: peptidase
Location: 5257 - 6393 (-)
Type: peptidase
Location: 5257 - 6393 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_7
Type: TC
Location: 6427 - 7260 (-)
Type: TC
Location: 6427 - 7260 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_8
Type: CAZyme
Location: 7457 - 9073 (+)
Type: CAZyme
Location: 7457 - 9073 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_9
Type: pfam
Location: 9139 - 10353 (-)
Type: pfam
Location: 9139 - 10353 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_10
Type: CAZyme
Location: 10476 - 12029 (+)
Type: CAZyme
Location: 10476 - 12029 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_11
Type: pfam
Location: 12132 - 13565 (+)
Type: pfam
Location: 12132 - 13565 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_12
Type: pfam
Location: 13562 - 13984 (+)
Type: pfam
Location: 13562 - 13984 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_25707_13
Type: TC
Location: 14186 - 15247 (+)
Type: TC
Location: 14186 - 15247 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.