Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_93 | 106732 | 108039 | + | 3.A.7.4.2 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_94 | 108032 | 110347 | + | 3.A.7.4.2 |
| NULL(UNKNOWN) | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_95 | 110366 | 110749 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_96 | 110730 | 111716 | + | 3.A.7.4.2 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_97 | 111731 | 112117 | + | TrbC |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_98 | 112114 | 112383 | + | VirB3 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_99 | 112396 | 114885 | + | 3.A.7.4.2 |
| NULL(UNKNOWN) | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_100 | 114846 | 115754 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_101 | 115759 | 116880 | + | TrbL |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_21060 | RahmanSF_2018_SRR5963402_bin.6_k141_21060_102 | 116890 | 118698 | + | GH23 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_93
Type: TC
Location: 106732 - 108039 (+)
Type: TC
Location: 106732 - 108039 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_94
Type: TC
Location: 108032 - 110347 (+)
Type: TC
Location: 108032 - 110347 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_95
Type:
Location: 110366 - 110749 (+)
Type:
Location: 110366 - 110749 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_96
Type: TC
Location: 110730 - 111716 (+)
Type: TC
Location: 110730 - 111716 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_97
Type: pfam
Location: 111731 - 112117 (+)
Type: pfam
Location: 111731 - 112117 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_98
Type: pfam
Location: 112114 - 112383 (+)
Type: pfam
Location: 112114 - 112383 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_99
Type: TC
Location: 112396 - 114885 (+)
Type: TC
Location: 112396 - 114885 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_100
Type:
Location: 114846 - 115754 (+)
Type:
Location: 114846 - 115754 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_101
Type: pfam
Location: 115759 - 116880 (+)
Type: pfam
Location: 115759 - 116880 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_21060_102
Type: CAZyme
Location: 116890 - 118698 (+)
Type: CAZyme
Location: 116890 - 118698 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.