Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_2918 | RahmanSF_2018_SRR5963402_bin.6_k141_2918_17 | 16029 | 17222 | - | GH18 |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_2918 | RahmanSF_2018_SRR5963402_bin.6_k141_2918_18 | 17346 | 18062 | - | CE4 |
| TF | RahmanSF_2018_SRR5963402_bin.6_k141_2918 | RahmanSF_2018_SRR5963402_bin.6_k141_2918_19 | 18202 | 18939 | - | GntR |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_2918 | RahmanSF_2018_SRR5963402_bin.6_k141_2918_20 | 18979 | 20382 | - | AA4 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_2918 | RahmanSF_2018_SRR5963402_bin.6_k141_2918_21 | 20609 | 22195 | - | 2.A.14.1.3 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_2918_17
Type: CAZyme
Location: 16029 - 17222 (-)
Type: CAZyme
Location: 16029 - 17222 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_2918_18
Type: CAZyme
Location: 17346 - 18062 (-)
Type: CAZyme
Location: 17346 - 18062 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_2918_19
Type: TF
Location: 18202 - 18939 (-)
Type: TF
Location: 18202 - 18939 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_2918_20
Type: CAZyme
Location: 18979 - 20382 (-)
Type: CAZyme
Location: 18979 - 20382 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_2918_21
Type: TC
Location: 20609 - 22195 (-)
Type: TC
Location: 20609 - 22195 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.