Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- CGC Family ID: CGCFAM_01996
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_15560 | RahmanSF_2018_SRR5963402_bin.6_k141_15560_17 | 14660 | 15625 | + | GT2 |
| peptidase | RahmanSF_2018_SRR5963402_bin.6_k141_15560 | RahmanSF_2018_SRR5963402_bin.6_k141_15560_18 | 15835 | 16506 | + | C40.UNW |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_15560 | RahmanSF_2018_SRR5963402_bin.6_k141_15560_19 | 16619 | 18334 | + | 3.A.1.106.2 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_15560 | RahmanSF_2018_SRR5963402_bin.6_k141_15560_20 | 18405 | 19334 | + | 3.A.1.15.11 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_15560 | RahmanSF_2018_SRR5963402_bin.6_k141_15560_21 | 19371 | 20096 | + | 3.A.1.15.11 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_15560 | RahmanSF_2018_SRR5963402_bin.6_k141_15560_22 | 20116 | 20925 | + | 3.A.1.15.11 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_15560_17
Type: CAZyme
Location: 14660 - 15625 (+)
Type: CAZyme
Location: 14660 - 15625 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_15560_18
Type: peptidase
Location: 15835 - 16506 (+)
Type: peptidase
Location: 15835 - 16506 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_15560_19
Type: TC
Location: 16619 - 18334 (+)
Type: TC
Location: 16619 - 18334 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_15560_20
Type: TC
Location: 18405 - 19334 (+)
Type: TC
Location: 18405 - 19334 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_15560_21
Type: TC
Location: 19371 - 20096 (+)
Type: TC
Location: 19371 - 20096 (+)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_15560_22
Type: TC
Location: 20116 - 20925 (+)
Type: TC
Location: 20116 - 20925 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.