Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC17
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: alpha-glucan
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- CGC Family ID: CGCFAM_00004
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_359 | 406251 | 408056 | - | 3.A.1.129.1 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_360 | 408053 | 409771 | - | 3.A.1.129.1 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_361 | 409895 | 410899 | - | 3.D.4.3.2 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_362 | 410890 | 412269 | - | 3.D.4.3.2 |
| TF | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_363 | 412288 | 412698 | - | Rrf2 |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_364 | 412820 | 416215 | - | GH13_39 | GH77 |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_365 | 416234 | 418642 | - | GT35 |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_366 | 418661 | 420094 | - | GT5 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_367 | 420096 | 421208 | - | NTP_transferase | Hexapep_GlmU |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_368 | 421228 | 422409 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_369 | 422406 | 424325 | - | CBM48 | GH13_9 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_359
Type: TC
Location: 406251 - 408056 (-)
Type: TC
Location: 406251 - 408056 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_360
Type: TC
Location: 408053 - 409771 (-)
Type: TC
Location: 408053 - 409771 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_361
Type: TC
Location: 409895 - 410899 (-)
Type: TC
Location: 409895 - 410899 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_362
Type: TC
Location: 410890 - 412269 (-)
Type: TC
Location: 410890 - 412269 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_363
Type: TF
Location: 412288 - 412698 (-)
Type: TF
Location: 412288 - 412698 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_364
Type: CAZyme
Location: 412820 - 416215 (-)
Type: CAZyme
Location: 412820 - 416215 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_365
Type: CAZyme
Location: 416234 - 418642 (-)
Type: CAZyme
Location: 416234 - 418642 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_366
Type: CAZyme
Location: 418661 - 420094 (-)
Type: CAZyme
Location: 418661 - 420094 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_367
Type: pfam
Location: 420096 - 421208 (-)
Type: pfam
Location: 420096 - 421208 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_368
Type: pfam
Location: 421228 - 422409 (-)
Type: pfam
Location: 421228 - 422409 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_369
Type: CAZyme
Location: 422406 - 424325 (-)
Type: CAZyme
Location: 422406 - 424325 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.