Cluster: RahmanSF_2018_SRR5963402_bin.6_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963402_bin.6
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_149 | 177576 | 178490 | - | GT2 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_150 | 178495 | 179979 | - | Glyco_transf_9 | TPR_8 | TPR_8 | TPR_11 | TPR_16 | TPR_16 | DUF7017 |
| pfam | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_151 | 179989 | 180546 | - | dTDP_sugar_isom |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_152 | 180625 | 182799 | - | 3.A.1.109.2 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_153 | 182803 | 184164 | - | 8.A.1.3.1 |
| TC | RahmanSF_2018_SRR5963402_bin.6_k141_14567 | RahmanSF_2018_SRR5963402_bin.6_k141_14567_154 | 184166 | 186292 | - | 3.A.1.109.1 |
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_149
Type: CAZyme
Location: 177576 - 178490 (-)
Type: CAZyme
Location: 177576 - 178490 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_150
Type: pfam
Location: 178495 - 179979 (-)
Type: pfam
Location: 178495 - 179979 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_151
Type: pfam
Location: 179989 - 180546 (-)
Type: pfam
Location: 179989 - 180546 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_152
Type: TC
Location: 180625 - 182799 (-)
Type: TC
Location: 180625 - 182799 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_153
Type: TC
Location: 182803 - 184164 (-)
Type: TC
Location: 182803 - 184164 (-)
Gene ID: RahmanSF_2018_SRR5963402_bin.6_k141_14567_154
Type: TC
Location: 184166 - 186292 (-)
Type: TC
Location: 184166 - 186292 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
UMGS1260
Family
UMGS1260
Genus
UMGS1260
Species
UMGS1260 sp900550105
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.