dbCAN Logo

Cluster: RahmanSF_2018_SRR5963400_bin.7_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC RahmanSF_2018_SRR5963400_bin.7_k141_2732 RahmanSF_2018_SRR5963400_bin.7_k141_2732_3 1618 3228 + 3.A.1.106.1
TF RahmanSF_2018_SRR5963400_bin.7_k141_2732 RahmanSF_2018_SRR5963400_bin.7_k141_2732_4 3225 4118 - HTH_1
STP RahmanSF_2018_SRR5963400_bin.7_k141_2732 RahmanSF_2018_SRR5963400_bin.7_k141_2732_5 4263 5162 + Pyr_redox_2
TC RahmanSF_2018_SRR5963400_bin.7_k141_2732 RahmanSF_2018_SRR5963400_bin.7_k141_2732_6 5173 6204 + 2.A.98.1.4
pfam RahmanSF_2018_SRR5963400_bin.7_k141_2732 RahmanSF_2018_SRR5963400_bin.7_k141_2732_7 6253 7377 - MFS_1
CAZyme RahmanSF_2018_SRR5963400_bin.7_k141_2732 RahmanSF_2018_SRR5963400_bin.7_k141_2732_8 7611 12446 + CBM32 | CBM32 | CBM32 | GH20
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_2732_3
Type: TC
Location: 1618 - 3228 (+)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_2732_4
Type: TF
Location: 3225 - 4118 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_2732_5
Type: STP
Location: 4263 - 5162 (+)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_2732_6
Type: TC
Location: 5173 - 6204 (+)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_2732_7
Type: pfam
Location: 6253 - 7377 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_2732_8
Type: CAZyme
Location: 7611 - 12446 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List