dbCAN HGM

Cluster: RahmanSF_2018_SRR5963400_bin.7_CGC24

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 14
CAZyme Count: 1
Substrate:
Genome ID: RahmanSF_2018_SRR5963400_bin.7
Continent: North America
Source Study: Zeng et al., 2022 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_43	63132	63821	+	1.C.82.1.1
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_44	63956	65359	-	2.A.25.1.5
pfam	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_45	65712	66248	+	Ribosomal_L10
pfam	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_46	66292	66669	+	Ribosomal_L12 \| Ribosomal_L12_N
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_47	66993	68645	+	3.A.1.5.2
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_48	68896	69849	+	3.A.1.5.2
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_49	69854	70855	+	3.A.1.5.2
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_50	70862	71860	+	3.A.1.5.2
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_51	71863	72813	+	3.A.1.5.20
CAZyme	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_52	73024	79101	+	CBM51 \| GH2 \| GH2
pfam	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_53	79336	83166	+	RNA_pol_Rpb2_6 \| RNA_pol_Rpb2_7 \| RNA_pol_Rpb2_2 \| RNA_pol_Rpb2_2 \| RNA_pol_Rpb2_1 \| RNA_pol_Rpb2_3 \| RNA_pol_Rpb2_45
pfam	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_54	83181	86843	+	RNA_pol_Rpb1_2 \| RNA_pol_Rpb1_2 \| RNA_pol_Rpb1_3 \| RNA_pol_Rpb1_1 \| RNA_pol_Rpb1_5 \| RNA_pol_Rpb1_4
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_55	86898	88238	+	2.A.40.2.1
TC	RahmanSF_2018_SRR5963400_bin.7_k141_11453	RahmanSF_2018_SRR5963400_bin.7_k141_11453_56	88258	88920	+	9.B.143.2.3

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_43
Type: TC
Location: 63132 - 63821 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_44
Type: TC
Location: 63956 - 65359 (-)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_45
Type: pfam
Location: 65712 - 66248 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_46
Type: pfam
Location: 66292 - 66669 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_47
Type: TC
Location: 66993 - 68645 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_48
Type: TC
Location: 68896 - 69849 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_49
Type: TC
Location: 69854 - 70855 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_50
Type: TC
Location: 70862 - 71860 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_51
Type: TC
Location: 71863 - 72813 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_52
Type: CAZyme
Location: 73024 - 79101 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_53
Type: pfam
Location: 79336 - 83166 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_54
Type: pfam
Location: 83181 - 86843 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_55
Type: TC
Location: 86898 - 88238 (+)

Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_11453_56
Type: TC
Location: 88258 - 88920 (+)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Bacillota_A

→

Class

Clostridia

→

Order

Lachnospirales

→

Family

Lachnospiraceae

→

Genus

Faecalimonas

→

Species

Faecalimonas sp900551895

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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