Cluster: RahmanSF_2018_SRR5963400_bin.7_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963400_bin.7
- CGC Family ID: CGCFAM_06116
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_29 | 28322 | 29167 | - | 1.E.12.1.3 |
| TC | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_30 | 29505 | 30242 | - | 3.A.1.3.28 |
| pfam | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_31 | 30235 | 31059 | - | DUF169 |
| TC | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_32 | 31071 | 31736 | - | 3.A.1.3.13 |
| TC | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_33 | 31782 | 32603 | - | 3.A.1.3.14 |
| TC | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_34 | 33333 | 34214 | - | 2.A.115.1.1 |
| pfam | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_35 | 34343 | 34612 | - | Thioredoxin | Thioredoxin_9 |
| pfam | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_36 | 34802 | 35455 | - | Methyltransf_4 | Methyltransf_11 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_37 | 35477 | 37411 | - | CBM48 | GH13_9 |
| NULL(UNKNOWN) | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_38 | 37486 | 39966 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RahmanSF_2018_SRR5963400_bin.7_k141_6264 | RahmanSF_2018_SRR5963400_bin.7_k141_6264_39 | 40708 | 41262 | + | 3.A.1.25.3 |
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_29
Type: TC
Location: 28322 - 29167 (-)
Type: TC
Location: 28322 - 29167 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_30
Type: TC
Location: 29505 - 30242 (-)
Type: TC
Location: 29505 - 30242 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_31
Type: pfam
Location: 30235 - 31059 (-)
Type: pfam
Location: 30235 - 31059 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_32
Type: TC
Location: 31071 - 31736 (-)
Type: TC
Location: 31071 - 31736 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_33
Type: TC
Location: 31782 - 32603 (-)
Type: TC
Location: 31782 - 32603 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_34
Type: TC
Location: 33333 - 34214 (-)
Type: TC
Location: 33333 - 34214 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_35
Type: pfam
Location: 34343 - 34612 (-)
Type: pfam
Location: 34343 - 34612 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_36
Type: pfam
Location: 34802 - 35455 (-)
Type: pfam
Location: 34802 - 35455 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_37
Type: CAZyme
Location: 35477 - 37411 (-)
Type: CAZyme
Location: 35477 - 37411 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_38
Type:
Location: 37486 - 39966 (-)
Type:
Location: 37486 - 39966 (-)
Gene ID: RahmanSF_2018_SRR5963400_bin.7_k141_6264_39
Type: TC
Location: 40708 - 41262 (+)
Type: TC
Location: 40708 - 41262 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Faecalimonas
Species
Faecalimonas sp900551895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.