Cluster: RahmanSF_2018_SRR5963280_bin.15_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: RahmanSF_2018_SRR5963280_bin.15
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963280_bin.15_k141_8813 | RahmanSF_2018_SRR5963280_bin.15_k141_8813_4 | 1421 | 3616 | - | GT51 |
| pfam | RahmanSF_2018_SRR5963280_bin.15_k141_8813 | RahmanSF_2018_SRR5963280_bin.15_k141_8813_5 | 3703 | 4578 | + | PseudoU_synth_2 |
| pfam | RahmanSF_2018_SRR5963280_bin.15_k141_8813 | RahmanSF_2018_SRR5963280_bin.15_k141_8813_6 | 4648 | 5658 | - | Gp_dh_N | Gp_dh_C |
| TC | RahmanSF_2018_SRR5963280_bin.15_k141_8813 | RahmanSF_2018_SRR5963280_bin.15_k141_8813_7 | 5835 | 7094 | - | 3.A.1.122.13 |
| TC | RahmanSF_2018_SRR5963280_bin.15_k141_8813 | RahmanSF_2018_SRR5963280_bin.15_k141_8813_8 | 7105 | 7788 | - | 3.A.1.122.14 |
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8813_4
Type: CAZyme
Location: 1421 - 3616 (-)
Type: CAZyme
Location: 1421 - 3616 (-)
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8813_5
Type: pfam
Location: 3703 - 4578 (+)
Type: pfam
Location: 3703 - 4578 (+)
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8813_6
Type: pfam
Location: 4648 - 5658 (-)
Type: pfam
Location: 4648 - 5658 (-)
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8813_7
Type: TC
Location: 5835 - 7094 (-)
Type: TC
Location: 5835 - 7094 (-)
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8813_8
Type: TC
Location: 7105 - 7788 (-)
Type: TC
Location: 7105 - 7788 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.