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Cluster: RahmanSF_2018_SRR5963280_bin.15_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC RahmanSF_2018_SRR5963280_bin.15_k141_8130 RahmanSF_2018_SRR5963280_bin.15_k141_8130_2 328 2211 - 4.A.1.2.12
NULL(UNKNOWN) RahmanSF_2018_SRR5963280_bin.15_k141_8130 RahmanSF_2018_SRR5963280_bin.15_k141_8130_3 2329 2535 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme RahmanSF_2018_SRR5963280_bin.15_k141_8130 RahmanSF_2018_SRR5963280_bin.15_k141_8130_4 2592 4046 + GH32
TF RahmanSF_2018_SRR5963280_bin.15_k141_8130 RahmanSF_2018_SRR5963280_bin.15_k141_8130_5 4027 4992 + LacI
TC RahmanSF_2018_SRR5963280_bin.15_k141_8130 RahmanSF_2018_SRR5963280_bin.15_k141_8130_6 5183 6457 - 2.A.6.6.11
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8130_2
Type: TC
Location: 328 - 2211 (-)
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8130_3
Type:
Location: 2329 - 2535 (-)
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8130_4
Type: CAZyme
Location: 2592 - 4046 (+)
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8130_5
Type: TF
Location: 4027 - 4992 (+)
Gene ID: RahmanSF_2018_SRR5963280_bin.15_k141_8130_6
Type: TC
Location: 5183 - 6457 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
RahmanSF_2018_SRR5963280_bin.15_k141_8130_3 vegan > omnivore 21.81914 0.01332

🧭 Explore Read Mapping of CGC

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