Cluster: RahmanSF_2018_SRR5963239_bin.10_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: alpha-mannan
- Genome ID: RahmanSF_2018_SRR5963239_bin.10
- CGC Family ID: CGCFAM_02290
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_39 | 33486 | 34859 | - | GH1 |
| pfam | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_40 | 34852 | 35724 | - | ROK |
| TF | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_41 | 35766 | 36497 | + | HTH_6 |
| CAZyme | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_42 | 36490 | 37770 | - | GH125 |
| CAZyme | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_43 | 37770 | 40391 | - | GH38 |
| CAZyme | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_44 | 40388 | 41683 | - | GH84 |
| STP | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_45 | 41797 | 43269 | - | SBP_bac_1 |
| pfam | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_46 | 43289 | 44851 | - | DUF3502 | SBP_bac_8 |
| TC | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_47 | 44873 | 45796 | - | 3.A.1.1.29 |
| TC | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_48 | 45805 | 46806 | - | 3.A.1.1.9 |
| NULL(UNKNOWN) | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_49 | 46818 | 47459 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RahmanSF_2018_SRR5963239_bin.10_k141_4238 | RahmanSF_2018_SRR5963239_bin.10_k141_4238_50 | 47459 | 48550 | - | 3.A.1.1.26 |
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_39
Type: CAZyme
Location: 33486 - 34859 (-)
Type: CAZyme
Location: 33486 - 34859 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_40
Type: pfam
Location: 34852 - 35724 (-)
Type: pfam
Location: 34852 - 35724 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_41
Type: TF
Location: 35766 - 36497 (+)
Type: TF
Location: 35766 - 36497 (+)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_42
Type: CAZyme
Location: 36490 - 37770 (-)
Type: CAZyme
Location: 36490 - 37770 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_43
Type: CAZyme
Location: 37770 - 40391 (-)
Type: CAZyme
Location: 37770 - 40391 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_44
Type: CAZyme
Location: 40388 - 41683 (-)
Type: CAZyme
Location: 40388 - 41683 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_45
Type: STP
Location: 41797 - 43269 (-)
Type: STP
Location: 41797 - 43269 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_46
Type: pfam
Location: 43289 - 44851 (-)
Type: pfam
Location: 43289 - 44851 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_47
Type: TC
Location: 44873 - 45796 (-)
Type: TC
Location: 44873 - 45796 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_48
Type: TC
Location: 45805 - 46806 (-)
Type: TC
Location: 45805 - 46806 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_49
Type:
Location: 46818 - 47459 (-)
Type:
Location: 46818 - 47459 (-)
Gene ID: RahmanSF_2018_SRR5963239_bin.10_k141_4238_50
Type: TC
Location: 47459 - 48550 (-)
Type: TC
Location: 47459 - 48550 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Peptoniphilaceae
Genus
Anaerococcus
Species
Anaerococcus sp027669155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.