Cluster: PUL0728_Rep_719_C0
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: Rep_719
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| peptidase | PUL0728_Rep_719_C0 | Rep_719_c_23_5 | 5199 | 5903 | - | C82.UPA |
| CAZyme | PUL0728_Rep_719_C0 | Rep_719_c_23_6 | 5934 | 6416 | - | CBM50 |
| pfam | PUL0728_Rep_719_C0 | Rep_719_c_23_7 | 6485 | 7300 | - | TatD_DNase |
| pfam | PUL0728_Rep_719_C0 | Rep_719_c_23_8 | 7374 | 8492 | + | LpxR |
| CAZyme | PUL0728_Rep_719_C0 | Rep_719_c_23_9 | 8635 | 12435 | + | CBM32 | GH2 |
| pfam | PUL0728_Rep_719_C0 | Rep_719_c_23_10 | 12784 | 13476 | - | PEP-CTERM |
| NULL(UNKNOWN) | PUL0728_Rep_719_C0 | Rep_719_c_23_11 | 13489 | 14493 | - | NULL(UNKNOWN) |
| CAZyme | PUL0728_Rep_719_C0 | Rep_719_c_23_12 | 14604 | 16019 | - | GH29 |
| CAZyme | PUL0728_Rep_719_C0 | Rep_719_c_23_13 | 16365 | 18584 | - | GH33 |
| sulfatase | PUL0728_Rep_719_C0 | Rep_719_c_23_14 | 18604 | 19506 | - | S1_8 |
| STP | PUL0728_Rep_719_C0 | Rep_719_c_23_15 | 19701 | 22379 | + | HATPase_c | HisKA |
| TF | PUL0728_Rep_719_C0 | Rep_719_c_23_16 | 22399 | 23097 | + | Trans_reg_C |
| TC | PUL0728_Rep_719_C0 | Rep_719_c_23_17 | 23248 | 24027 | + | 1.B.71.1.5 |
| TC | PUL0728_Rep_719_C0 | Rep_719_c_23_18 | 24145 | 25845 | + | 3.A.3.7.2 |
| TC | PUL0728_Rep_719_C0 | Rep_719_c_23_19 | 25879 | 27990 | + | 3.A.3.7.2 |
| TC | PUL0728_Rep_719_C0 | Rep_719_c_23_20 | 28020 | 28586 | + | 3.A.3.7.2 |
| CAZyme | PUL0728_Rep_719_C0 | Rep_719_c_23_21 | 28736 | 30337 | - | GH27 |
| TC | PUL0728_Rep_719_C0 | Rep_719_c_23_22 | 30549 | 33092 | + | 3.A.9.1.2 |
Gene ID: Rep_719_c_23_5
Type: peptidase
Location: 5199 - 5903 (-)
Type: peptidase
Location: 5199 - 5903 (-)
Gene ID: Rep_719_c_23_6
Type: CAZyme
Location: 5934 - 6416 (-)
Type: CAZyme
Location: 5934 - 6416 (-)
Gene ID: Rep_719_c_23_7
Type: pfam
Location: 6485 - 7300 (-)
Type: pfam
Location: 6485 - 7300 (-)
Gene ID: Rep_719_c_23_8
Type: pfam
Location: 7374 - 8492 (+)
Type: pfam
Location: 7374 - 8492 (+)
Gene ID: Rep_719_c_23_9
Type: CAZyme
Location: 8635 - 12435 (+)
Type: CAZyme
Location: 8635 - 12435 (+)
Gene ID: Rep_719_c_23_10
Type: pfam
Location: 12784 - 13476 (-)
Type: pfam
Location: 12784 - 13476 (-)
Gene ID: Rep_719_c_23_11
Type: null
Location: 13489 - 14493 (-)
Type: null
Location: 13489 - 14493 (-)
Gene ID: Rep_719_c_23_12
Type: CAZyme
Location: 14604 - 16019 (-)
Type: CAZyme
Location: 14604 - 16019 (-)
Gene ID: Rep_719_c_23_13
Type: CAZyme
Location: 16365 - 18584 (-)
Type: CAZyme
Location: 16365 - 18584 (-)
Gene ID: Rep_719_c_23_14
Type: sulfatase
Location: 18604 - 19506 (-)
Type: sulfatase
Location: 18604 - 19506 (-)
Gene ID: Rep_719_c_23_15
Type: STP
Location: 19701 - 22379 (+)
Type: STP
Location: 19701 - 22379 (+)
Gene ID: Rep_719_c_23_16
Type: TF
Location: 22399 - 23097 (+)
Type: TF
Location: 22399 - 23097 (+)
Gene ID: Rep_719_c_23_17
Type: TC
Location: 23248 - 24027 (+)
Type: TC
Location: 23248 - 24027 (+)
Gene ID: Rep_719_c_23_18
Type: TC
Location: 24145 - 25845 (+)
Type: TC
Location: 24145 - 25845 (+)
Gene ID: Rep_719_c_23_19
Type: TC
Location: 25879 - 27990 (+)
Type: TC
Location: 25879 - 27990 (+)
Gene ID: Rep_719_c_23_20
Type: TC
Location: 28020 - 28586 (+)
Type: TC
Location: 28020 - 28586 (+)
Gene ID: Rep_719_c_23_21
Type: CAZyme
Location: 28736 - 30337 (-)
Type: CAZyme
Location: 28736 - 30337 (-)
Gene ID: Rep_719_c_23_22
Type: TC
Location: 30549 - 33092 (+)
Type: TC
Location: 30549 - 33092 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia biwaensis
Gene Composition
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