Cluster: PUL0718_HRGMv2_0156_C3
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate: alginate
- Genome ID: HRGMv2_0156
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TF | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3357 | 4376785 | 4377504 | - | GntR |
| TC | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3358 | 4377745 | 4380900 | + | 1.B.14.6.1 |
| TC | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3359 | 4380914 | 4382431 | + | 8.A.46.1.5 |
| CAZyme | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3361 | 4384142 | 4386418 | + | PL6 | PL6_1 |
| CAZyme | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3362 | 4386455 | 4388662 | + | PL17 | PL17_2 |
| STP | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3363 | 4388689 | 4389033 | + | AraC_binding |
| TC | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3364 | 4389038 | 4390504 | + | 2.A.1.14.25 |
| pfam | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3365 | 4390527 | 4391279 | + | adh_short | KR | adh_short_C2 | SDR |
| CAZyme | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3366 | 4391504 | 4392706 | + | PL38 |
| peptidase | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3367 | 4392734 | 4393723 | + | S09.UPB |
| NULL(UNKNOWN) | PUL0718_HRGMv2_0156_C3 | HRGMv2_0156_1_3368 | 4393729 | 4394625 | + | NULL(UNKNOWN) |
Gene ID: HRGMv2_0156_1_3357
Type: TF
Location: 4376785 - 4377504 (-)
Type: TF
Location: 4376785 - 4377504 (-)
Gene ID: HRGMv2_0156_1_3358
Type: TC
Location: 4377745 - 4380900 (+)
Type: TC
Location: 4377745 - 4380900 (+)
Gene ID: HRGMv2_0156_1_3359
Type: TC
Location: 4380914 - 4382431 (+)
Type: TC
Location: 4380914 - 4382431 (+)
Gene ID: HRGMv2_0156_1_3361
Type: CAZyme
Location: 4384142 - 4386418 (+)
Type: CAZyme
Location: 4384142 - 4386418 (+)
Gene ID: HRGMv2_0156_1_3362
Type: CAZyme
Location: 4386455 - 4388662 (+)
Type: CAZyme
Location: 4386455 - 4388662 (+)
Gene ID: HRGMv2_0156_1_3363
Type: STP
Location: 4388689 - 4389033 (+)
Type: STP
Location: 4388689 - 4389033 (+)
Gene ID: HRGMv2_0156_1_3364
Type: TC
Location: 4389038 - 4390504 (+)
Type: TC
Location: 4389038 - 4390504 (+)
Gene ID: HRGMv2_0156_1_3365
Type: pfam
Location: 4390527 - 4391279 (+)
Type: pfam
Location: 4390527 - 4391279 (+)
Gene ID: HRGMv2_0156_1_3366
Type: CAZyme
Location: 4391504 - 4392706 (+)
Type: CAZyme
Location: 4391504 - 4392706 (+)
Gene ID: HRGMv2_0156_1_3367
Type: peptidase
Location: 4392734 - 4393723 (+)
Type: peptidase
Location: 4392734 - 4393723 (+)
Gene ID: HRGMv2_0156_1_3368
Type: null
Location: 4393729 - 4394625 (+)
Type: null
Location: 4393729 - 4394625 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Composition
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