dbCAN HGM

Cluster: PUL0707

Cluster Details
Gene Composition
Taxonomic Lineage
Gene Composition

🧬 Cluster Details

Gene Count: 46
CAZyme Count: 4
Substrate: galactan
Genome ID: PUL0707
Continent: NA
Source Study: dbCAN-PUL Database →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
pfam	NC_008228	PATL_RS09875	1	378	+	Glyoxalase \| Ble-like_N
TC	NC_008228	PATL_RS09880	1189	4104	+	1.B.14.12.1
pfam	NC_008228	PATL_RS09885	4299	5795	+	Trp_halogenase
TC	NC_008228	PATL_RS09890	6284	9316	+	1.B.14.12.1
CAZyme	NC_008228	PATL_RS09895	9412	13764	+	GH13_13
NULL(UNKNOWN)	NC_008228	PATL_RS09905	14683	15216	+	NULL(UNKNOWN)
pfam	NC_008228	PATL_RS09910	15324	16532	-	DDE_Tnp_1
NULL(UNKNOWN)	NC_008228	PATL_RS09915	16672	17091	+	NULL(UNKNOWN)
pfam	NC_008228	PATL_RS09920	17207	18415	-	DDE_Tnp_1
NULL(UNKNOWN)	NC_008228	PATL_RS09930	18898	19350	+	NULL(UNKNOWN)
NULL(UNKNOWN)	NC_008228	PATL_RS09935	19482	20465	-	NULL(UNKNOWN)
NULL(UNKNOWN)	NC_008228	PATL_RS09945	21295	21813	+	NULL(UNKNOWN)
pfam	NC_008228	PATL_RS09950	21836	22792	-	DEDD_Tnp_IS110 \| Transposase_20
NULL(UNKNOWN)	NC_008228	PATL_RS09955	23132	23476	+	NULL(UNKNOWN)
NULL(UNKNOWN)	NC_008228	PATL_RS09960	23574	24089	+	NULL(UNKNOWN)
NULL(UNKNOWN)	NC_008228	PATL_RS09965	24190	24693	+	NULL(UNKNOWN)
STP	NC_008228	PATL_RS09970	25530	26087	+	CHASE3
pfam	NC_008228	PATL_RS09975	26192	26530	-	YggL_50S_bp
pfam	NC_008228	PATL_RS22450	26887	27045	+	DUF2986
pfam	NC_008228	PATL_RS09980	27148	27543	+	DUF3465
pfam	NC_008228	PATL_RS09985	27688	28959	-	Amino_oxidase \| Amino_oxidase \| NAD_binding_8
TC	NC_008228	PATL_RS09990	29163	29783	+	8.A.58.2.12
pfam	NC_008228	PATL_RS09995	30032	30814	-	DUF1451
TF	NC_008228	PATL_RS10000	30977	31747	-	0040266
pfam	NC_008228	PATL_RS10005	31950	32732	+	PhyH
NULL(UNKNOWN)	NC_008228	PATL_RS10010	32733	33860	+	NULL(UNKNOWN)
pfam	NC_008228	PATL_RS10015	34121	34858	-	SapC
pfam	NC_008228	PATL_RS10020	34911	36506	-	Trp_halogenase
NULL(UNKNOWN)	NC_008228	PATL_RS10025	36654	38789	-	NULL(UNKNOWN)
pfam	NC_008228	PATL_RS10030	38863	42525	-	TonB_dep_Rec_b-barrel \| Plug
TF	NC_008228	PATL_RS10035	43463	43732	-	HTH_11 \| HTH_3
CAZyme	NC_008228	PATL_RS10040	43847	44932	-	GH117 \| GH117
STP	NC_008228	PATL_RS10045	44971	45927	-	PfkB
TC	NC_008228	PATL_RS10050	45929	47518	-	2.A.1.1.55
CAZyme	NC_008228	PATL_RS10055	47990	50371	+	GH50
pfam	NC_008228	PATL_RS23040	50736	51269	+	N_methyl
STP	NC_008228	PATL_RS10065	51496	52686	+	Pkinase
NULL(UNKNOWN)	NC_008228	PATL_RS22815	52713	52883	-	NULL(UNKNOWN)
CAZyme	NC_008228	PATL_RS10070	53112	55373	+	AA2
pfam	NC_008228	PATL_RS10075	55498	56283	-	adh_short \| Epimerase \| KR \| adh_short_C2
peptidase	NC_008228	PATL_RS10080	56280	57389	-	S09.UPW
peptidase	NC_008228	PATL_RS10085	57416	58618	-	S33.UPW
TC	NC_008228	PATL_RS10090	58650	59945	-	2.A.8.1.13
TC	NC_008228	PATL_RS10095	60139	62463	+	1.B.14.8.2
TF	NC_008228	PATL_RS10105	62773	63414	+	GerE
pfam	NC_008228	PATL_RS10110	63490	65349	-	Na_H_Exchanger

Gene ID: PATL_RS09875
Type: pfam
Location: 1 - 378 (+)

Gene ID: PATL_RS09880
Type: TC
Location: 1189 - 4104 (+)

Gene ID: PATL_RS09885
Type: pfam
Location: 4299 - 5795 (+)

Gene ID: PATL_RS09890
Type: TC
Location: 6284 - 9316 (+)

Gene ID: PATL_RS09895
Type: CAZyme
Location: 9412 - 13764 (+)

Gene ID: PATL_RS09905
Type: null
Location: 14683 - 15216 (+)

Gene ID: PATL_RS09910
Type: pfam
Location: 15324 - 16532 (-)

Gene ID: PATL_RS09915
Type: null
Location: 16672 - 17091 (+)

Gene ID: PATL_RS09920
Type: pfam
Location: 17207 - 18415 (-)

Gene ID: PATL_RS09930
Type: null
Location: 18898 - 19350 (+)

Gene ID: PATL_RS09935
Type: null
Location: 19482 - 20465 (-)

Gene ID: PATL_RS09945
Type: null
Location: 21295 - 21813 (+)

Gene ID: PATL_RS09950
Type: pfam
Location: 21836 - 22792 (-)

Gene ID: PATL_RS09955
Type: null
Location: 23132 - 23476 (+)

Gene ID: PATL_RS09960
Type: null
Location: 23574 - 24089 (+)

Gene ID: PATL_RS09965
Type: null
Location: 24190 - 24693 (+)

Gene ID: PATL_RS09970
Type: STP
Location: 25530 - 26087 (+)

Gene ID: PATL_RS09975
Type: pfam
Location: 26192 - 26530 (-)

Gene ID: PATL_RS22450
Type: pfam
Location: 26887 - 27045 (+)

Gene ID: PATL_RS09980
Type: pfam
Location: 27148 - 27543 (+)

Gene ID: PATL_RS09985
Type: pfam
Location: 27688 - 28959 (-)

Gene ID: PATL_RS09990
Type: TC
Location: 29163 - 29783 (+)

Gene ID: PATL_RS09995
Type: pfam
Location: 30032 - 30814 (-)

Gene ID: PATL_RS10000
Type: TF
Location: 30977 - 31747 (-)

Gene ID: PATL_RS10005
Type: pfam
Location: 31950 - 32732 (+)

Gene ID: PATL_RS10010
Type: null
Location: 32733 - 33860 (+)

Gene ID: PATL_RS10015
Type: pfam
Location: 34121 - 34858 (-)

Gene ID: PATL_RS10020
Type: pfam
Location: 34911 - 36506 (-)

Gene ID: PATL_RS10025
Type: null
Location: 36654 - 38789 (-)

Gene ID: PATL_RS10030
Type: pfam
Location: 38863 - 42525 (-)

Gene ID: PATL_RS10035
Type: TF
Location: 43463 - 43732 (-)

Gene ID: PATL_RS10040
Type: CAZyme
Location: 43847 - 44932 (-)

Gene ID: PATL_RS10045
Type: STP
Location: 44971 - 45927 (-)

Gene ID: PATL_RS10050
Type: TC
Location: 45929 - 47518 (-)

Gene ID: PATL_RS10055
Type: CAZyme
Location: 47990 - 50371 (+)

Gene ID: PATL_RS23040
Type: pfam
Location: 50736 - 51269 (+)

Gene ID: PATL_RS10065
Type: STP
Location: 51496 - 52686 (+)

Gene ID: PATL_RS22815
Type: null
Location: 52713 - 52883 (-)

Gene ID: PATL_RS10070
Type: CAZyme
Location: 53112 - 55373 (+)

Gene ID: PATL_RS10075
Type: pfam
Location: 55498 - 56283 (-)

Gene ID: PATL_RS10080
Type: peptidase
Location: 56280 - 57389 (-)

Gene ID: PATL_RS10085
Type: peptidase
Location: 57416 - 58618 (-)

Gene ID: PATL_RS10090
Type: TC
Location: 58650 - 59945 (-)

Gene ID: PATL_RS10095
Type: TC
Location: 60139 - 62463 (+)

Gene ID: PATL_RS10105
Type: TF
Location: 62773 - 63414 (+)

Gene ID: PATL_RS10110
Type: pfam
Location: 63490 - 65349 (-)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Pseudomonadota

→

Class

Gammaproteobacteria

→

Order

Alteromonadales

→

Family

Pseudoalteromonadaceae

→

Genus

Pseudoalteromonas

→

Species

Pseudoalteromonas atlantica

Gene Composition

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