Cluster: PUL0706
🧬 Cluster Details
- Gene Count: 43
- CAZyme Count: 15
- Substrate: galactan
- Genome ID: PUL0706
- Continent: NA
- Source Study: dbCAN-PUL Database →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | NC_008228 | PATL_RS04110 | 1 | 2577 | + | GH2 |
| CAZyme | NC_008228 | PATL_RS04115 | 2590 | 3477 | + | GH16_14 |
| pfam | NC_008228 | PATL_RS04120 | 3584 | 4252 | - | Exop_C |
| pfam | NC_008228 | PATL_RS04125 | 4281 | 5780 | - | Trp_halogenase |
| pfam | NC_008228 | PATL_RS04130 | 5871 | 7571 | - | Big_2 |
| pfam | NC_008228 | PATL_RS04135 | 7646 | 11302 | - | TonB_dep_Rec_b-barrel | Plug |
| CAZyme | NC_008228 | PATL_RS04140 | 11997 | 13349 | + | CBM6 | GH43_2 |
| pfam | NC_008228 | PATL_RS04145 | 13394 | 14308 | + | 3keto-disac_hyd |
| CAZyme | NC_008228 | PATL_RS04150 | 14305 | 15597 | + | GH117 | GH117 |
| NULL(UNKNOWN) | NC_008228 | PATL_RS04155 | 15651 | 15956 | + | NULL(UNKNOWN) |
| pfam | NC_008228 | PATL_RS04160 | 16026 | 17444 | - | DUF1501 |
| TC | NC_008228 | PATL_RS04165 | 17454 | 20678 | - | 1.B.14.17.1 |
| NULL(UNKNOWN) | NC_008228 | PATL_RS04170 | 20687 | 21928 | - | NULL(UNKNOWN) |
| pfam | NC_008228 | PATL_RS04175 | 21931 | 23328 | - | PSCyt1 |
| TF | NC_008228 | PATL_RS04180 | 23498 | 24379 | + | HTH_AraC | HTH_AraC |
| sulfatase | NC_008228 | PATL_RS04185 | 24517 | 26088 | - | S1_15 |
| sulfatase | NC_008228 | PATL_RS04190 | 26104 | 27987 | - | S1_17 |
| CAZyme | NC_008228 | PATL_RS04195 | 27990 | 31229 | - | GH2 |
| pfam | NC_008228 | PATL_RS04200 | 31395 | 31751 | + | rhaM |
| CAZyme | NC_008228 | PATL_RS04205 | 31913 | 33517 | + | GH29 |
| CAZyme | NC_008228 | PATL_RS04210 | 33559 | 34923 | + | GH16_12 |
| CAZyme | NC_008228 | PATL_RS04215 | 35098 | 37299 | - | GH3 |
| sulfatase | NC_008228 | PATL_RS04220 | 37409 | 39292 | + | S1_24 |
| TF | NC_008228 | PATL_RS04225 | 39289 | 40167 | + | HTH_AraC | HTH_AraC |
| pfam | NC_008228 | PATL_RS04230 | 40187 | 41674 | + | Lipase_GDSL | Lipase_GDSL_2 |
| sulfatase | NC_008228 | PATL_RS04235 | 41720 | 43252 | + | S1_15 |
| CAZyme | NC_008228 | PATL_RS04240 | 43364 | 45271 | - | CE20 | CE20 |
| CAZyme | NC_008228 | PATL_RS04245 | 45322 | 46914 | - | GH29 |
| CAZyme | NC_008228 | PATL_RS04250 | 47295 | 50234 | + | GH2 |
| CAZyme | NC_008228 | PATL_RS04255 | 50224 | 51861 | + | GH140 |
| pfam | NC_008228 | PATL_RS04260 | 51866 | 53344 | + | Mannitol_dh | Mannitol_dh_C |
| TC | NC_008228 | PATL_RS04265 | 53357 | 54925 | + | 2.A.21.3.2 |
| STP | NC_008228 | PATL_RS04270 | 54948 | 55895 | + | PfkB |
| peptidase | NC_008228 | PATL_RS04275 | 55895 | 56818 | + | S09.UPC |
| NULL(UNKNOWN) | NC_008228 | PATL_RS04280 | 56887 | 57657 | - | NULL(UNKNOWN) |
| CAZyme | NC_008228 | PATL_RS04285 | 58115 | 61066 | + | GH86 |
| pfam | NC_008228 | PATL_RS04290 | 61067 | 62023 | - | DEDD_Tnp_IS110 | Transposase_20 |
| NULL(UNKNOWN) | NC_008228 | PATL_RS04295 | 62313 | 62528 | + | NULL(UNKNOWN) |
| CAZyme | NC_008228 | PATL_RS04300 | 63079 | 64719 | - | CBM91 | GH43_12 |
| CAZyme | NC_008228 | PATL_RS04305 | 64841 | 65695 | - | GH16_14 |
| pfam | NC_008228 | PATL_RS04310 | 66340 | 67389 | - | Rieske | VanA_C |
| TF | NC_008228 | PATL_RS04315 | 67652 | 68347 | + | GntR |
| TF | NC_008228 | PATL_RS04320 | 68449 | 69360 | - | HTH_1 |
Gene ID: PATL_RS04110
Type: CAZyme
Location: 1 - 2577 (+)
Type: CAZyme
Location: 1 - 2577 (+)
Gene ID: PATL_RS04115
Type: CAZyme
Location: 2590 - 3477 (+)
Type: CAZyme
Location: 2590 - 3477 (+)
Gene ID: PATL_RS04120
Type: pfam
Location: 3584 - 4252 (-)
Type: pfam
Location: 3584 - 4252 (-)
Gene ID: PATL_RS04125
Type: pfam
Location: 4281 - 5780 (-)
Type: pfam
Location: 4281 - 5780 (-)
Gene ID: PATL_RS04130
Type: pfam
Location: 5871 - 7571 (-)
Type: pfam
Location: 5871 - 7571 (-)
Gene ID: PATL_RS04135
Type: pfam
Location: 7646 - 11302 (-)
Type: pfam
Location: 7646 - 11302 (-)
Gene ID: PATL_RS04140
Type: CAZyme
Location: 11997 - 13349 (+)
Type: CAZyme
Location: 11997 - 13349 (+)
Gene ID: PATL_RS04145
Type: pfam
Location: 13394 - 14308 (+)
Type: pfam
Location: 13394 - 14308 (+)
Gene ID: PATL_RS04150
Type: CAZyme
Location: 14305 - 15597 (+)
Type: CAZyme
Location: 14305 - 15597 (+)
Gene ID: PATL_RS04155
Type: null
Location: 15651 - 15956 (+)
Type: null
Location: 15651 - 15956 (+)
Gene ID: PATL_RS04160
Type: pfam
Location: 16026 - 17444 (-)
Type: pfam
Location: 16026 - 17444 (-)
Gene ID: PATL_RS04165
Type: TC
Location: 17454 - 20678 (-)
Type: TC
Location: 17454 - 20678 (-)
Gene ID: PATL_RS04170
Type: null
Location: 20687 - 21928 (-)
Type: null
Location: 20687 - 21928 (-)
Gene ID: PATL_RS04175
Type: pfam
Location: 21931 - 23328 (-)
Type: pfam
Location: 21931 - 23328 (-)
Gene ID: PATL_RS04180
Type: TF
Location: 23498 - 24379 (+)
Type: TF
Location: 23498 - 24379 (+)
Gene ID: PATL_RS04185
Type: sulfatase
Location: 24517 - 26088 (-)
Type: sulfatase
Location: 24517 - 26088 (-)
Gene ID: PATL_RS04190
Type: sulfatase
Location: 26104 - 27987 (-)
Type: sulfatase
Location: 26104 - 27987 (-)
Gene ID: PATL_RS04195
Type: CAZyme
Location: 27990 - 31229 (-)
Type: CAZyme
Location: 27990 - 31229 (-)
Gene ID: PATL_RS04200
Type: pfam
Location: 31395 - 31751 (+)
Type: pfam
Location: 31395 - 31751 (+)
Gene ID: PATL_RS04205
Type: CAZyme
Location: 31913 - 33517 (+)
Type: CAZyme
Location: 31913 - 33517 (+)
Gene ID: PATL_RS04210
Type: CAZyme
Location: 33559 - 34923 (+)
Type: CAZyme
Location: 33559 - 34923 (+)
Gene ID: PATL_RS04215
Type: CAZyme
Location: 35098 - 37299 (-)
Type: CAZyme
Location: 35098 - 37299 (-)
Gene ID: PATL_RS04220
Type: sulfatase
Location: 37409 - 39292 (+)
Type: sulfatase
Location: 37409 - 39292 (+)
Gene ID: PATL_RS04225
Type: TF
Location: 39289 - 40167 (+)
Type: TF
Location: 39289 - 40167 (+)
Gene ID: PATL_RS04230
Type: pfam
Location: 40187 - 41674 (+)
Type: pfam
Location: 40187 - 41674 (+)
Gene ID: PATL_RS04235
Type: sulfatase
Location: 41720 - 43252 (+)
Type: sulfatase
Location: 41720 - 43252 (+)
Gene ID: PATL_RS04240
Type: CAZyme
Location: 43364 - 45271 (-)
Type: CAZyme
Location: 43364 - 45271 (-)
Gene ID: PATL_RS04245
Type: CAZyme
Location: 45322 - 46914 (-)
Type: CAZyme
Location: 45322 - 46914 (-)
Gene ID: PATL_RS04250
Type: CAZyme
Location: 47295 - 50234 (+)
Type: CAZyme
Location: 47295 - 50234 (+)
Gene ID: PATL_RS04255
Type: CAZyme
Location: 50224 - 51861 (+)
Type: CAZyme
Location: 50224 - 51861 (+)
Gene ID: PATL_RS04260
Type: pfam
Location: 51866 - 53344 (+)
Type: pfam
Location: 51866 - 53344 (+)
Gene ID: PATL_RS04265
Type: TC
Location: 53357 - 54925 (+)
Type: TC
Location: 53357 - 54925 (+)
Gene ID: PATL_RS04270
Type: STP
Location: 54948 - 55895 (+)
Type: STP
Location: 54948 - 55895 (+)
Gene ID: PATL_RS04275
Type: peptidase
Location: 55895 - 56818 (+)
Type: peptidase
Location: 55895 - 56818 (+)
Gene ID: PATL_RS04280
Type: null
Location: 56887 - 57657 (-)
Type: null
Location: 56887 - 57657 (-)
Gene ID: PATL_RS04285
Type: CAZyme
Location: 58115 - 61066 (+)
Type: CAZyme
Location: 58115 - 61066 (+)
Gene ID: PATL_RS04290
Type: pfam
Location: 61067 - 62023 (-)
Type: pfam
Location: 61067 - 62023 (-)
Gene ID: PATL_RS04295
Type: null
Location: 62313 - 62528 (+)
Type: null
Location: 62313 - 62528 (+)
Gene ID: PATL_RS04300
Type: CAZyme
Location: 63079 - 64719 (-)
Type: CAZyme
Location: 63079 - 64719 (-)
Gene ID: PATL_RS04305
Type: CAZyme
Location: 64841 - 65695 (-)
Type: CAZyme
Location: 64841 - 65695 (-)
Gene ID: PATL_RS04310
Type: pfam
Location: 66340 - 67389 (-)
Type: pfam
Location: 66340 - 67389 (-)
Gene ID: PATL_RS04315
Type: TF
Location: 67652 - 68347 (+)
Type: TF
Location: 67652 - 68347 (+)
Gene ID: PATL_RS04320
Type: TF
Location: 68449 - 69360 (-)
Type: TF
Location: 68449 - 69360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Pseudoalteromonadaceae
Genus
Pseudoalteromonas
Species
Pseudoalteromonas atlantica
Gene Composition
Loading chart...
← Back to Cluster List