Cluster: PUL0621
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate: pectin
- Genome ID: PUL0621
- CGC Family ID: CGCFAM_01244
- Continent: NA
- Source Study: dbCAN-PUL Database →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | JABKKE010000002 | HPS55_02230 | 1 | 3237 | + | 1.B.14.6.1 |
| pfam | JABKKE010000002 | HPS55_02235 | 3259 | 5190 | + | SusD_RagB | SusD-like_3 |
| pfam | JABKKE010000002 | HPS55_02240 | 5209 | 6807 | + | DUF4957 | DUF5123 |
| CAZyme | JABKKE010000002 | HPS55_02250 | 9337 | 11919 | + | GH3 |
| TF | JABKKE010000002 | HPS55_02255 | 12133 | 16029 | - | HTH_AraC | HTH_AraC |
| CAZyme | JABKKE010000002 | HPS55_02260 | 16671 | 18074 | - | GH57 |
| CAZyme | JABKKE010000002 | HPS55_02265 | 18149 | 19417 | - | GT4 |
| CAZyme | JABKKE010000002 | HPS55_02270 | 19433 | 21382 | - | GH133 |
Gene ID: HPS55_02230
Type: TC
Location: 1 - 3237 (+)
Type: TC
Location: 1 - 3237 (+)
Gene ID: HPS55_02235
Type: pfam
Location: 3259 - 5190 (+)
Type: pfam
Location: 3259 - 5190 (+)
Gene ID: HPS55_02240
Type: pfam
Location: 5209 - 6807 (+)
Type: pfam
Location: 5209 - 6807 (+)
Gene ID: HPS55_02250
Type: CAZyme
Location: 9337 - 11919 (+)
Type: CAZyme
Location: 9337 - 11919 (+)
Gene ID: HPS55_02255
Type: TF
Location: 12133 - 16029 (-)
Type: TF
Location: 12133 - 16029 (-)
Gene ID: HPS55_02260
Type: CAZyme
Location: 16671 - 18074 (-)
Type: CAZyme
Location: 16671 - 18074 (-)
Gene ID: HPS55_02265
Type: CAZyme
Location: 18149 - 19417 (-)
Type: CAZyme
Location: 18149 - 19417 (-)
Gene ID: HPS55_02270
Type: CAZyme
Location: 19433 - 21382 (-)
Type: CAZyme
Location: 19433 - 21382 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Prevotellaceae
Genus
Palleniella
Species
Palleniella intestinalis
Gene Composition
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