Cluster: PUL0572_Rep_800_C0
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate: alginate
- Genome ID: Rep_800
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| pfam | PUL0572_Rep_800_C0 | Rep_800_c_44_56 | 64756 | 66066 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | PUL0572_Rep_800_C0 | Rep_800_c_44_57 | 66210 | 67691 | + | GT2 |
| pfam | PUL0572_Rep_800_C0 | Rep_800_c_44_58 | 67774 | 68943 | + | PilZ | HlyD_3 |
| pfam | PUL0572_Rep_800_C0 | Rep_800_c_44_59 | 68957 | 70384 | + | Sel1 | Sel1 | Sel1 |
| TC | PUL0572_Rep_800_C0 | Rep_800_c_44_60 | 70381 | 71853 | + | 1.B.13.1.1 |
| pfam | PUL0572_Rep_800_C0 | Rep_800_c_44_61 | 71874 | 73505 | + | NosD | Beta_helix |
| pfam | PUL0572_Rep_800_C0 | Rep_800_c_44_62 | 73518 | 74942 | + | ALGX | CBM_26 |
| CAZyme | PUL0572_Rep_800_C0 | Rep_800_c_44_63 | 74946 | 76049 | + | PL5_1 |
| TC | PUL0572_Rep_800_C0 | Rep_800_c_44_64 | 76279 | 77841 | + | 2.A.50.2.1 |
| pfam | PUL0572_Rep_800_C0 | Rep_800_c_44_65 | 77856 | 79031 | + | ALGX |
| pfam | PUL0572_Rep_800_C0 | Rep_800_c_44_66 | 79104 | 79754 | + | AlgF |
| STP | PUL0572_Rep_800_C0 | Rep_800_c_44_67 | 79951 | 81396 | + | AraC_binding |
Gene ID: Rep_800_c_44_56
Type: pfam
Location: 64756 - 66066 (+)
Type: pfam
Location: 64756 - 66066 (+)
Gene ID: Rep_800_c_44_57
Type: CAZyme
Location: 66210 - 67691 (+)
Type: CAZyme
Location: 66210 - 67691 (+)
Gene ID: Rep_800_c_44_58
Type: pfam
Location: 67774 - 68943 (+)
Type: pfam
Location: 67774 - 68943 (+)
Gene ID: Rep_800_c_44_59
Type: pfam
Location: 68957 - 70384 (+)
Type: pfam
Location: 68957 - 70384 (+)
Gene ID: Rep_800_c_44_60
Type: TC
Location: 70381 - 71853 (+)
Type: TC
Location: 70381 - 71853 (+)
Gene ID: Rep_800_c_44_61
Type: pfam
Location: 71874 - 73505 (+)
Type: pfam
Location: 71874 - 73505 (+)
Gene ID: Rep_800_c_44_62
Type: pfam
Location: 73518 - 74942 (+)
Type: pfam
Location: 73518 - 74942 (+)
Gene ID: Rep_800_c_44_63
Type: CAZyme
Location: 74946 - 76049 (+)
Type: CAZyme
Location: 74946 - 76049 (+)
Gene ID: Rep_800_c_44_64
Type: TC
Location: 76279 - 77841 (+)
Type: TC
Location: 76279 - 77841 (+)
Gene ID: Rep_800_c_44_65
Type: pfam
Location: 77856 - 79031 (+)
Type: pfam
Location: 77856 - 79031 (+)
Gene ID: Rep_800_c_44_66
Type: pfam
Location: 79104 - 79754 (+)
Type: pfam
Location: 79104 - 79754 (+)
Gene ID: Rep_800_c_44_67
Type: STP
Location: 79951 - 81396 (+)
Type: STP
Location: 79951 - 81396 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Species
Pseudomonas aeruginosa
Gene Composition
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