Cluster: PUL0560_Rep_490_C0
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 4
- Substrate: arabinogalactan
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_06462
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | PUL0560_Rep_490_C0 | Rep_490_c_2_3581 | 4717705 | 4719891 | + | PL27 |
| CAZyme | PUL0560_Rep_490_C0 | Rep_490_c_2_3582 | 4719975 | 4721723 | - | GH43_24 |
| CAZyme | PUL0560_Rep_490_C0 | Rep_490_c_2_3583 | 4721765 | 4723246 | - | GH43_24 |
| NULL(UNKNOWN) | PUL0560_Rep_490_C0 | Rep_490_c_2_3584 | 4723259 | 4724719 | - | NULL(UNKNOWN) |
| TF | PUL0560_Rep_490_C0 | Rep_490_c_2_3585 | 4725002 | 4729120 | + | HTH_AraC | HTH_AraC |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3586 | 4729395 | 4732328 | + | Plug |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3587 | 4732362 | 4733900 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | PUL0560_Rep_490_C0 | Rep_490_c_2_3588 | 4733914 | 4734708 | + | NULL(UNKNOWN) |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3589 | 4734692 | 4735726 | + | DUF5007 |
| TC | PUL0560_Rep_490_C0 | Rep_490_c_2_3590 | 4735750 | 4738920 | + | 1.B.14.6.1 |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3591 | 4738945 | 4740456 | + | SusD_RagB | SusD-like_3 |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3592 | 4740483 | 4741205 | + | Fasciclin |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3593 | 4741226 | 4742911 | + | DUF5008 | DUF5124 | DUF5122 | DUF5122 |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3594 | 4742952 | 4744757 | + | Laminin_G_3 |
| peptidase | PUL0560_Rep_490_C0 | Rep_490_c_2_3595 | 4744771 | 4746888 | + | M98.UNW |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3596 | 4746900 | 4748672 | + | Phosphodiest |
| NULL(UNKNOWN) | PUL0560_Rep_490_C0 | Rep_490_c_2_3597 | 4748819 | 4749571 | + | NULL(UNKNOWN) |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3598 | 4749677 | 4750318 | - | Bac_DNA_binding | HU-HIG |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3599 | 4750620 | 4751915 | + | VapE-like_dom | DUF3874 |
| NULL(UNKNOWN) | PUL0560_Rep_490_C0 | Rep_490_c_2_3600 | 4752150 | 4753601 | + | NULL(UNKNOWN) |
| TC | PUL0560_Rep_490_C0 | Rep_490_c_2_3601 | 4753831 | 4755249 | + | 1.A.30.2.9 |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3602 | 4755233 | 4755679 | + | ExbD |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3603 | 4755684 | 4756109 | + | ExbD |
| NULL(UNKNOWN) | PUL0560_Rep_490_C0 | Rep_490_c_2_3604 | 4756084 | 4757607 | + | NULL(UNKNOWN) |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3605 | 4757865 | 4760555 | - | CarbopepD_reg_2 | OMP_b-brl_3 | OMP_b-brl_3 |
| CAZyme | PUL0560_Rep_490_C0 | Rep_490_c_2_3606 | 4760873 | 4763212 | + | GH35 |
| pfam | PUL0560_Rep_490_C0 | Rep_490_c_2_3607 | 4763418 | 4764383 | + | Phage_integrase | Phage_int_SAM_5 |
Gene ID: Rep_490_c_2_3581
Type: CAZyme
Location: 4717705 - 4719891 (+)
Type: CAZyme
Location: 4717705 - 4719891 (+)
Gene ID: Rep_490_c_2_3582
Type: CAZyme
Location: 4719975 - 4721723 (-)
Type: CAZyme
Location: 4719975 - 4721723 (-)
Gene ID: Rep_490_c_2_3583
Type: CAZyme
Location: 4721765 - 4723246 (-)
Type: CAZyme
Location: 4721765 - 4723246 (-)
Gene ID: Rep_490_c_2_3584
Type: null
Location: 4723259 - 4724719 (-)
Type: null
Location: 4723259 - 4724719 (-)
Gene ID: Rep_490_c_2_3585
Type: TF
Location: 4725002 - 4729120 (+)
Type: TF
Location: 4725002 - 4729120 (+)
Gene ID: Rep_490_c_2_3586
Type: pfam
Location: 4729395 - 4732328 (+)
Type: pfam
Location: 4729395 - 4732328 (+)
Gene ID: Rep_490_c_2_3587
Type: pfam
Location: 4732362 - 4733900 (+)
Type: pfam
Location: 4732362 - 4733900 (+)
Gene ID: Rep_490_c_2_3588
Type: null
Location: 4733914 - 4734708 (+)
Type: null
Location: 4733914 - 4734708 (+)
Gene ID: Rep_490_c_2_3589
Type: pfam
Location: 4734692 - 4735726 (+)
Type: pfam
Location: 4734692 - 4735726 (+)
Gene ID: Rep_490_c_2_3590
Type: TC
Location: 4735750 - 4738920 (+)
Type: TC
Location: 4735750 - 4738920 (+)
Gene ID: Rep_490_c_2_3591
Type: pfam
Location: 4738945 - 4740456 (+)
Type: pfam
Location: 4738945 - 4740456 (+)
Gene ID: Rep_490_c_2_3592
Type: pfam
Location: 4740483 - 4741205 (+)
Type: pfam
Location: 4740483 - 4741205 (+)
Gene ID: Rep_490_c_2_3593
Type: pfam
Location: 4741226 - 4742911 (+)
Type: pfam
Location: 4741226 - 4742911 (+)
Gene ID: Rep_490_c_2_3594
Type: pfam
Location: 4742952 - 4744757 (+)
Type: pfam
Location: 4742952 - 4744757 (+)
Gene ID: Rep_490_c_2_3595
Type: peptidase
Location: 4744771 - 4746888 (+)
Type: peptidase
Location: 4744771 - 4746888 (+)
Gene ID: Rep_490_c_2_3596
Type: pfam
Location: 4746900 - 4748672 (+)
Type: pfam
Location: 4746900 - 4748672 (+)
Gene ID: Rep_490_c_2_3597
Type: null
Location: 4748819 - 4749571 (+)
Type: null
Location: 4748819 - 4749571 (+)
Gene ID: Rep_490_c_2_3598
Type: pfam
Location: 4749677 - 4750318 (-)
Type: pfam
Location: 4749677 - 4750318 (-)
Gene ID: Rep_490_c_2_3599
Type: pfam
Location: 4750620 - 4751915 (+)
Type: pfam
Location: 4750620 - 4751915 (+)
Gene ID: Rep_490_c_2_3600
Type: null
Location: 4752150 - 4753601 (+)
Type: null
Location: 4752150 - 4753601 (+)
Gene ID: Rep_490_c_2_3601
Type: TC
Location: 4753831 - 4755249 (+)
Type: TC
Location: 4753831 - 4755249 (+)
Gene ID: Rep_490_c_2_3602
Type: pfam
Location: 4755233 - 4755679 (+)
Type: pfam
Location: 4755233 - 4755679 (+)
Gene ID: Rep_490_c_2_3603
Type: pfam
Location: 4755684 - 4756109 (+)
Type: pfam
Location: 4755684 - 4756109 (+)
Gene ID: Rep_490_c_2_3604
Type: null
Location: 4756084 - 4757607 (+)
Type: null
Location: 4756084 - 4757607 (+)
Gene ID: Rep_490_c_2_3605
Type: pfam
Location: 4757865 - 4760555 (-)
Type: pfam
Location: 4757865 - 4760555 (-)
Gene ID: Rep_490_c_2_3606
Type: CAZyme
Location: 4760873 - 4763212 (+)
Type: CAZyme
Location: 4760873 - 4763212 (+)
Gene ID: Rep_490_c_2_3607
Type: pfam
Location: 4763418 - 4764383 (+)
Type: pfam
Location: 4763418 - 4764383 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Composition
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