Cluster: PUL0529_HRGMv2_0156_C0
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 12
- Substrate: pectin
- Genome ID: HRGMv2_0156
- CGC Family ID: CGCFAM_06408
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TF | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2214 | 2682047 | 2686387 | + | HTH_AraC | HTH_AraC |
| pfam | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2215 | 2686521 | 2687288 | - | Ubie_methyltran | TehB | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2216 | 2687699 | 2690290 | + | GH3 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2217 | 2691014 | 2692588 | - | GH28 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2218 | 2692614 | 2695025 | - | CE8 |
| pfam | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2219 | 2695067 | 2696923 | - | Mfa_like_1 |
| pfam | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2220 | 2696979 | 2698631 | - | DUF5123 |
| TC | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2221 | 2698652 | 2700553 | - | 8.A.46.1.3 |
| TC | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2222 | 2700579 | 2703791 | - | 1.B.14.6.1 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2223 | 2703837 | 2706224 | - | PL1_2 |
| pfam | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2224 | 2706259 | 2708064 | - | DUF5123 |
| NULL(UNKNOWN) | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2225 | 2708077 | 2708961 | - | NULL(UNKNOWN) |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2226 | 2709357 | 2710886 | - | PL1_2 |
| TF | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2227 | 2711005 | 2711823 | - | LytTR |
| TC | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2228 | 2711827 | 2712621 | - | 9.B.116.3.2 |
| TC | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2229 | 2712977 | 2716225 | + | 1.B.14.6.1 |
| pfam | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2230 | 2716251 | 2718158 | + | SusD_RagB | SusD-like_3 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2232 | 2720136 | 2721764 | + | CE8 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2233 | 2721858 | 2723441 | + | PL1_2 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2234 | 2723473 | 2725134 | + | PL1_2 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2235 | 2725170 | 2726666 | + | PL1_2 |
| TF | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2237 | 2726811 | 2731346 | - | HTH_AraC |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2238 | 2731512 | 2733260 | - | CE12 | CE8 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2239 | 2733619 | 2734563 | - | CE8 |
| CAZyme | PUL0529_HRGMv2_0156_C0 | HRGMv2_0156_1_2240 | 2734600 | 2735799 | - | GH105 |
Gene ID: HRGMv2_0156_1_2214
Type: TF
Location: 2682047 - 2686387 (+)
Type: TF
Location: 2682047 - 2686387 (+)
Gene ID: HRGMv2_0156_1_2215
Type: pfam
Location: 2686521 - 2687288 (-)
Type: pfam
Location: 2686521 - 2687288 (-)
Gene ID: HRGMv2_0156_1_2216
Type: CAZyme
Location: 2687699 - 2690290 (+)
Type: CAZyme
Location: 2687699 - 2690290 (+)
Gene ID: HRGMv2_0156_1_2217
Type: CAZyme
Location: 2691014 - 2692588 (-)
Type: CAZyme
Location: 2691014 - 2692588 (-)
Gene ID: HRGMv2_0156_1_2218
Type: CAZyme
Location: 2692614 - 2695025 (-)
Type: CAZyme
Location: 2692614 - 2695025 (-)
Gene ID: HRGMv2_0156_1_2219
Type: pfam
Location: 2695067 - 2696923 (-)
Type: pfam
Location: 2695067 - 2696923 (-)
Gene ID: HRGMv2_0156_1_2220
Type: pfam
Location: 2696979 - 2698631 (-)
Type: pfam
Location: 2696979 - 2698631 (-)
Gene ID: HRGMv2_0156_1_2221
Type: TC
Location: 2698652 - 2700553 (-)
Type: TC
Location: 2698652 - 2700553 (-)
Gene ID: HRGMv2_0156_1_2222
Type: TC
Location: 2700579 - 2703791 (-)
Type: TC
Location: 2700579 - 2703791 (-)
Gene ID: HRGMv2_0156_1_2223
Type: CAZyme
Location: 2703837 - 2706224 (-)
Type: CAZyme
Location: 2703837 - 2706224 (-)
Gene ID: HRGMv2_0156_1_2224
Type: pfam
Location: 2706259 - 2708064 (-)
Type: pfam
Location: 2706259 - 2708064 (-)
Gene ID: HRGMv2_0156_1_2225
Type: null
Location: 2708077 - 2708961 (-)
Type: null
Location: 2708077 - 2708961 (-)
Gene ID: HRGMv2_0156_1_2226
Type: CAZyme
Location: 2709357 - 2710886 (-)
Type: CAZyme
Location: 2709357 - 2710886 (-)
Gene ID: HRGMv2_0156_1_2227
Type: TF
Location: 2711005 - 2711823 (-)
Type: TF
Location: 2711005 - 2711823 (-)
Gene ID: HRGMv2_0156_1_2228
Type: TC
Location: 2711827 - 2712621 (-)
Type: TC
Location: 2711827 - 2712621 (-)
Gene ID: HRGMv2_0156_1_2229
Type: TC
Location: 2712977 - 2716225 (+)
Type: TC
Location: 2712977 - 2716225 (+)
Gene ID: HRGMv2_0156_1_2230
Type: pfam
Location: 2716251 - 2718158 (+)
Type: pfam
Location: 2716251 - 2718158 (+)
Gene ID: HRGMv2_0156_1_2232
Type: CAZyme
Location: 2720136 - 2721764 (+)
Type: CAZyme
Location: 2720136 - 2721764 (+)
Gene ID: HRGMv2_0156_1_2233
Type: CAZyme
Location: 2721858 - 2723441 (+)
Type: CAZyme
Location: 2721858 - 2723441 (+)
Gene ID: HRGMv2_0156_1_2234
Type: CAZyme
Location: 2723473 - 2725134 (+)
Type: CAZyme
Location: 2723473 - 2725134 (+)
Gene ID: HRGMv2_0156_1_2235
Type: CAZyme
Location: 2725170 - 2726666 (+)
Type: CAZyme
Location: 2725170 - 2726666 (+)
Gene ID: HRGMv2_0156_1_2237
Type: TF
Location: 2726811 - 2731346 (-)
Type: TF
Location: 2726811 - 2731346 (-)
Gene ID: HRGMv2_0156_1_2238
Type: CAZyme
Location: 2731512 - 2733260 (-)
Type: CAZyme
Location: 2731512 - 2733260 (-)
Gene ID: HRGMv2_0156_1_2239
Type: CAZyme
Location: 2733619 - 2734563 (-)
Type: CAZyme
Location: 2733619 - 2734563 (-)
Gene ID: HRGMv2_0156_1_2240
Type: CAZyme
Location: 2734600 - 2735799 (-)
Type: CAZyme
Location: 2734600 - 2735799 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides ovatus
Gene Composition
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