Cluster: PUL0338
🧬 Cluster Details
- Gene Count: 34
- CAZyme Count: 5
- Substrate: xylan
- Genome ID: PUL0338
- CGC Family ID: CGCFAM_04170
- Continent: NA
- Source Study: dbCAN-PUL Database →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | LT674128.1 | SIP56396.1 | 329 | 1504 | - | 2.A.1.36.3 |
| TF | LT674128.1 | SIP56397.1 | 1912 | 3612 | + | HTH_AraC | HTH_AraC |
| pfam | LT674128.1 | SIP56398.1 | 3777 | 5171 | - | Ras | MMR_HSR1 | FeoB_N | TrmE_N | MnmE_helical |
| pfam | LT674128.1 | SIP56399.1 | 5451 | 6329 | - | PNP_UDP_1 |
| pfam | LT674128.1 | SIP56400.1 | 6424 | 7425 | - | FloA |
| NULL(UNKNOWN) | LT674128.1 | SIP56401.1 | 7477 | 7947 | - | NULL(UNKNOWN) |
| STP | LT674128.1 | SIP56402.1 | 7956 | 9386 | - | TPR_2 |
| pfam | LT674128.1 | SIP56403.1 | 9553 | 10302 | + | ATP_bind_3 |
| TC | LT674128.1 | SIP56404.1 | 10324 | 10692 | + | 2.A.7.34.3 |
| pfam | LT674128.1 | SIP56405.1 | 10714 | 11730 | - | ApbE |
| TC | LT674128.1 | SIP56406.1 | 11757 | 12335 | - | 2.A.107.1.2 |
| pfam | LT674128.1 | SIP56407.1 | 12343 | 13125 | - | DUF6048 |
| pfam | LT674128.1 | SIP56408.1 | 13079 | 13564 | - | DUF6452 |
| CAZyme | LT674128.1 | SIP56409.1 | 13567 | 14520 | - | GT2 |
| pfam | LT674128.1 | SIP56410.1 | 14576 | 15121 | - | DUF4199 |
| TF | LT674128.1 | SIP56411.1 | 15817 | 18768 | + | GerE |
| TC | LT674128.1 | SIP56412.1 | 19059 | 22211 | + | 1.B.14.6.1 |
| pfam | LT674128.1 | SIP56413.1 | 22230 | 23825 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | LT674128.1 | SIP56414.1 | 23899 | 24108 | + | NULL(UNKNOWN) |
| CAZyme | LT674128.1 | SIP56415.1 | 24194 | 25138 | + | GH16_3 |
| CAZyme | LT674128.1 | SIP56416.1 | 25228 | 26520 | + | GH158 |
| CAZyme | LT674128.1 | SIP56417.1 | 26532 | 28775 | + | GH3 |
| pfam | LT674128.1 | SIP56418.1 | 28879 | 30168 | - | Enolase_C | Enolase_N | MR_MLE_C |
| pfam | LT674128.1 | SIP56419.1 | 30233 | 30901 | - | Pentapeptide | Pentapeptide | Pentapeptide | Pentapeptide_4 | Pentapeptide_4 |
| TC | LT674128.1 | SIP56420.1 | 30915 | 31292 | - | 1.A.43.1.1 |
| pfam | LT674128.1 | SIP56421.1 | 32018 | 32503 | + | HU-HIG |
| CAZyme | LT674128.1 | SIP56422.1 | 32731 | 34884 | + | GH97 |
| STP | LT674128.1 | SIP56423.1 | 35090 | 36031 | + | Fer4 |
| TF | LT674128.1 | SIP56424.1 | 36035 | 36841 | - | HTH_AraC |
| STP | LT674128.1 | SIP56425.1 | 37013 | 38425 | + | Pribosyltran |
| peptidase | LT674128.1 | SIP56426.1 | 38622 | 39845 | + | M20.003 |
| pfam | LT674128.1 | SIP56427.1 | 39877 | 40965 | + | GCV_T | GCV_T_C |
| peptidase | LT674128.1 | SIP56428.1 | 41057 | 42583 | - | M48.UNW |
| pfam | LT674128.1 | SIP56429.1 | 42765 | 43016 | - | Ribosomal_L31 |
Gene ID: SIP56396.1
Type: TC
Location: 329 - 1504 (-)
Type: TC
Location: 329 - 1504 (-)
Gene ID: SIP56397.1
Type: TF
Location: 1912 - 3612 (+)
Type: TF
Location: 1912 - 3612 (+)
Gene ID: SIP56398.1
Type: pfam
Location: 3777 - 5171 (-)
Type: pfam
Location: 3777 - 5171 (-)
Gene ID: SIP56399.1
Type: pfam
Location: 5451 - 6329 (-)
Type: pfam
Location: 5451 - 6329 (-)
Gene ID: SIP56400.1
Type: pfam
Location: 6424 - 7425 (-)
Type: pfam
Location: 6424 - 7425 (-)
Gene ID: SIP56401.1
Type: null
Location: 7477 - 7947 (-)
Type: null
Location: 7477 - 7947 (-)
Gene ID: SIP56402.1
Type: STP
Location: 7956 - 9386 (-)
Type: STP
Location: 7956 - 9386 (-)
Gene ID: SIP56403.1
Type: pfam
Location: 9553 - 10302 (+)
Type: pfam
Location: 9553 - 10302 (+)
Gene ID: SIP56404.1
Type: TC
Location: 10324 - 10692 (+)
Type: TC
Location: 10324 - 10692 (+)
Gene ID: SIP56405.1
Type: pfam
Location: 10714 - 11730 (-)
Type: pfam
Location: 10714 - 11730 (-)
Gene ID: SIP56406.1
Type: TC
Location: 11757 - 12335 (-)
Type: TC
Location: 11757 - 12335 (-)
Gene ID: SIP56407.1
Type: pfam
Location: 12343 - 13125 (-)
Type: pfam
Location: 12343 - 13125 (-)
Gene ID: SIP56408.1
Type: pfam
Location: 13079 - 13564 (-)
Type: pfam
Location: 13079 - 13564 (-)
Gene ID: SIP56409.1
Type: CAZyme
Location: 13567 - 14520 (-)
Type: CAZyme
Location: 13567 - 14520 (-)
Gene ID: SIP56410.1
Type: pfam
Location: 14576 - 15121 (-)
Type: pfam
Location: 14576 - 15121 (-)
Gene ID: SIP56411.1
Type: TF
Location: 15817 - 18768 (+)
Type: TF
Location: 15817 - 18768 (+)
Gene ID: SIP56412.1
Type: TC
Location: 19059 - 22211 (+)
Type: TC
Location: 19059 - 22211 (+)
Gene ID: SIP56413.1
Type: pfam
Location: 22230 - 23825 (+)
Type: pfam
Location: 22230 - 23825 (+)
Gene ID: SIP56414.1
Type: null
Location: 23899 - 24108 (+)
Type: null
Location: 23899 - 24108 (+)
Gene ID: SIP56415.1
Type: CAZyme
Location: 24194 - 25138 (+)
Type: CAZyme
Location: 24194 - 25138 (+)
Gene ID: SIP56416.1
Type: CAZyme
Location: 25228 - 26520 (+)
Type: CAZyme
Location: 25228 - 26520 (+)
Gene ID: SIP56417.1
Type: CAZyme
Location: 26532 - 28775 (+)
Type: CAZyme
Location: 26532 - 28775 (+)
Gene ID: SIP56418.1
Type: pfam
Location: 28879 - 30168 (-)
Type: pfam
Location: 28879 - 30168 (-)
Gene ID: SIP56419.1
Type: pfam
Location: 30233 - 30901 (-)
Type: pfam
Location: 30233 - 30901 (-)
Gene ID: SIP56420.1
Type: TC
Location: 30915 - 31292 (-)
Type: TC
Location: 30915 - 31292 (-)
Gene ID: SIP56421.1
Type: pfam
Location: 32018 - 32503 (+)
Type: pfam
Location: 32018 - 32503 (+)
Gene ID: SIP56422.1
Type: CAZyme
Location: 32731 - 34884 (+)
Type: CAZyme
Location: 32731 - 34884 (+)
Gene ID: SIP56423.1
Type: STP
Location: 35090 - 36031 (+)
Type: STP
Location: 35090 - 36031 (+)
Gene ID: SIP56424.1
Type: TF
Location: 36035 - 36841 (-)
Type: TF
Location: 36035 - 36841 (-)
Gene ID: SIP56425.1
Type: STP
Location: 37013 - 38425 (+)
Type: STP
Location: 37013 - 38425 (+)
Gene ID: SIP56426.1
Type: peptidase
Location: 38622 - 39845 (+)
Type: peptidase
Location: 38622 - 39845 (+)
Gene ID: SIP56427.1
Type: pfam
Location: 39877 - 40965 (+)
Type: pfam
Location: 39877 - 40965 (+)
Gene ID: SIP56428.1
Type: peptidase
Location: 41057 - 42583 (-)
Type: peptidase
Location: 41057 - 42583 (-)
Gene ID: SIP56429.1
Type: pfam
Location: 42765 - 43016 (-)
Type: pfam
Location: 42765 - 43016 (-)
Taxonomic Lineage
Gene Composition
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