Cluster: PUL0333_HRGMv2_0438_C0
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 2
- Substrate: beta-glucan
- Genome ID: HRGMv2_0438
- CGC Family ID: CGCFAM_04175
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| pfam | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_74 | 79370 | 81514 | + | S1 | RNB | OB_RNB | OB_Dis3 | CSD2 |
| pfam | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_75 | 81541 | 82017 | + | PNPOx_N | Pyridox_ox_2 |
| STP | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_76 | 82038 | 82985 | - | PALP |
| NULL(UNKNOWN) | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_77 | 83204 | 84103 | + | NULL(UNKNOWN) |
| pfam | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_78 | 84294 | 85805 | + | UPF0020 | THUMP | RlmL_1st |
| pfam | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_81 | 88286 | 89560 | + | GARS_A | ATP-grasp_3 | GARS_C | GARS_N |
| NULL(UNKNOWN) | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_82 | 89561 | 90556 | + | NULL(UNKNOWN) |
| TC | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_83 | 90541 | 91020 | + | 9.B.27.3.1 |
| pfam | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_84 | 91046 | 91723 | + | Methyltransf_30 |
| pfam | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_85 | 91747 | 92652 | + | ZnuA |
| TC | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_86 | 92687 | 93496 | + | 3.A.1.15.12 |
| NULL(UNKNOWN) | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_87 | 93567 | 95456 | - | NULL(UNKNOWN) |
| CAZyme | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_88 | 95446 | 97974 | - | GH9 |
| pfam | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_89 | 97980 | 99224 | - | GlcNAc_2-epim |
| pfam | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_90 | 99426 | 101114 | - | SusD_RagB | SusD-like_3 |
| TC | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_91 | 101141 | 104305 | - | 1.B.14.6.1 |
| CAZyme | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_92 | 104439 | 106814 | - | GH31_3 |
| TF | PUL0333_HRGMv2_0438_C0 | HRGMv2_0438_1_93 | 107065 | 111009 | + | HTH_AraC | HTH_AraC |
Gene ID: HRGMv2_0438_1_74
Type: pfam
Location: 79370 - 81514 (+)
Type: pfam
Location: 79370 - 81514 (+)
Gene ID: HRGMv2_0438_1_75
Type: pfam
Location: 81541 - 82017 (+)
Type: pfam
Location: 81541 - 82017 (+)
Gene ID: HRGMv2_0438_1_76
Type: STP
Location: 82038 - 82985 (-)
Type: STP
Location: 82038 - 82985 (-)
Gene ID: HRGMv2_0438_1_77
Type: null
Location: 83204 - 84103 (+)
Type: null
Location: 83204 - 84103 (+)
Gene ID: HRGMv2_0438_1_78
Type: pfam
Location: 84294 - 85805 (+)
Type: pfam
Location: 84294 - 85805 (+)
Gene ID: HRGMv2_0438_1_81
Type: pfam
Location: 88286 - 89560 (+)
Type: pfam
Location: 88286 - 89560 (+)
Gene ID: HRGMv2_0438_1_82
Type: null
Location: 89561 - 90556 (+)
Type: null
Location: 89561 - 90556 (+)
Gene ID: HRGMv2_0438_1_83
Type: TC
Location: 90541 - 91020 (+)
Type: TC
Location: 90541 - 91020 (+)
Gene ID: HRGMv2_0438_1_84
Type: pfam
Location: 91046 - 91723 (+)
Type: pfam
Location: 91046 - 91723 (+)
Gene ID: HRGMv2_0438_1_85
Type: pfam
Location: 91747 - 92652 (+)
Type: pfam
Location: 91747 - 92652 (+)
Gene ID: HRGMv2_0438_1_86
Type: TC
Location: 92687 - 93496 (+)
Type: TC
Location: 92687 - 93496 (+)
Gene ID: HRGMv2_0438_1_87
Type: null
Location: 93567 - 95456 (-)
Type: null
Location: 93567 - 95456 (-)
Gene ID: HRGMv2_0438_1_88
Type: CAZyme
Location: 95446 - 97974 (-)
Type: CAZyme
Location: 95446 - 97974 (-)
Gene ID: HRGMv2_0438_1_89
Type: pfam
Location: 97980 - 99224 (-)
Type: pfam
Location: 97980 - 99224 (-)
Gene ID: HRGMv2_0438_1_90
Type: pfam
Location: 99426 - 101114 (-)
Type: pfam
Location: 99426 - 101114 (-)
Gene ID: HRGMv2_0438_1_91
Type: TC
Location: 101141 - 104305 (-)
Type: TC
Location: 101141 - 104305 (-)
Gene ID: HRGMv2_0438_1_92
Type: CAZyme
Location: 104439 - 106814 (-)
Type: CAZyme
Location: 104439 - 106814 (-)
Gene ID: HRGMv2_0438_1_93
Type: TF
Location: 107065 - 111009 (+)
Type: TF
Location: 107065 - 111009 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905197435
Gene Composition
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