Cluster: PUL0136
🧬 Cluster Details
- Gene Count: 26
- CAZyme Count: 6
- Substrate: pectin
- Genome ID: PUL0136
- CGC Family ID: CGCFAM_04135
- Continent: NA
- Source Study: dbCAN-PUL Database →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| STP | ADOP01000016 | PH505_ap00420 | 1 | 948 | - | PfkB |
| pfam | ADOP01000016 | PH505_ap00430 | 949 | 2436 | - | GD_AH_second | SAF | GD_AH_C |
| pfam | ADOP01000016 | PH505_ap00440 | 2438 | 3895 | - | Mannitol_dh | Mannitol_dh_C |
| pfam | ADOP01000016 | PH505_ap00450 | 4082 | 4846 | + | adh_short | KR | adh_short_C2 |
| pfam | ADOP01000016 | PH505_ap00460 | 4870 | 5712 | + | KduI |
| TC | ADOP01000016 | PH505_ap00470 | 5781 | 6731 | + | 2.A.56.1.5 |
| TC | ADOP01000016 | PH505_ap00480 | 6741 | 7229 | + | 2.A.56.1.5 |
| TC | ADOP01000016 | PH505_ap00490 | 7229 | 8530 | + | 2.A.56.1.5 |
| TF | ADOP01000016 | PH505_ap00500 | 8721 | 9722 | + | LacI |
| NULL(UNKNOWN) | ADOP01000016 | PH505_ap00510 | 9939 | 10106 | - | NULL(UNKNOWN) |
| CAZyme | ADOP01000016 | PH505_ap00520 | 10428 | 16586 | - | CE8 | PL1_5 |
| pfam | ADOP01000016 | PH505_ap00530 | 16665 | 19634 | - | TonB_dep_Rec_b-barrel | Plug |
| CAZyme | ADOP01000016 | PH505_ap00550 | 19825 | 21282 | + | PL1_2 |
| peptidase | ADOP01000016 | PH505_ap00560 | 21324 | 22280 | - | S09.UNW |
| pfam | ADOP01000016 | PH505_ap00570 | 22287 | 22616 | - | GH43_C2 |
| NULL(UNKNOWN) | ADOP01000016 | PH505_ap00580 | 22577 | 22807 | - | NULL(UNKNOWN) |
| pfam | ADOP01000016 | PH505_ap00590 | 23173 | 23529 | - | Glyco_hydro_43 |
| CAZyme | ADOP01000016 | PH505_ap00600 | 23533 | 24744 | - | GH105 |
| CAZyme | ADOP01000016 | PH505_ap00610 | 24855 | 27404 | - | GH105 |
| pfam | ADOP01000016 | PH505_ap00620 | 27454 | 28902 | - | UxaC |
| pfam | ADOP01000016 | PH505_ap00630 | 28995 | 29618 | - | Aldolase |
| CAZyme | ADOP01000016 | PH505_ap00640 | 29632 | 31104 | - | GH28 |
| NULL(UNKNOWN) | ADOP01000016 | PH505_ap00650 | 31347 | 31481 | - | NULL(UNKNOWN) |
| pfam | ADOP01000016 | PH505_ap00660 | 31490 | 32014 | - | Plug |
| TC | ADOP01000016 | PH505_ap00670 | 32503 | 35217 | - | 1.B.14.12.2 |
| CAZyme | ADOP01000016 | PH505_ap00680 | 35638 | 36396 | + | CE12 |
Gene ID: PH505_ap00420
Type: STP
Location: 1 - 948 (-)
Type: STP
Location: 1 - 948 (-)
Gene ID: PH505_ap00430
Type: pfam
Location: 949 - 2436 (-)
Type: pfam
Location: 949 - 2436 (-)
Gene ID: PH505_ap00440
Type: pfam
Location: 2438 - 3895 (-)
Type: pfam
Location: 2438 - 3895 (-)
Gene ID: PH505_ap00450
Type: pfam
Location: 4082 - 4846 (+)
Type: pfam
Location: 4082 - 4846 (+)
Gene ID: PH505_ap00460
Type: pfam
Location: 4870 - 5712 (+)
Type: pfam
Location: 4870 - 5712 (+)
Gene ID: PH505_ap00470
Type: TC
Location: 5781 - 6731 (+)
Type: TC
Location: 5781 - 6731 (+)
Gene ID: PH505_ap00480
Type: TC
Location: 6741 - 7229 (+)
Type: TC
Location: 6741 - 7229 (+)
Gene ID: PH505_ap00490
Type: TC
Location: 7229 - 8530 (+)
Type: TC
Location: 7229 - 8530 (+)
Gene ID: PH505_ap00500
Type: TF
Location: 8721 - 9722 (+)
Type: TF
Location: 8721 - 9722 (+)
Gene ID: PH505_ap00510
Type: null
Location: 9939 - 10106 (-)
Type: null
Location: 9939 - 10106 (-)
Gene ID: PH505_ap00520
Type: CAZyme
Location: 10428 - 16586 (-)
Type: CAZyme
Location: 10428 - 16586 (-)
Gene ID: PH505_ap00530
Type: pfam
Location: 16665 - 19634 (-)
Type: pfam
Location: 16665 - 19634 (-)
Gene ID: PH505_ap00550
Type: CAZyme
Location: 19825 - 21282 (+)
Type: CAZyme
Location: 19825 - 21282 (+)
Gene ID: PH505_ap00560
Type: peptidase
Location: 21324 - 22280 (-)
Type: peptidase
Location: 21324 - 22280 (-)
Gene ID: PH505_ap00570
Type: pfam
Location: 22287 - 22616 (-)
Type: pfam
Location: 22287 - 22616 (-)
Gene ID: PH505_ap00580
Type: null
Location: 22577 - 22807 (-)
Type: null
Location: 22577 - 22807 (-)
Gene ID: PH505_ap00590
Type: pfam
Location: 23173 - 23529 (-)
Type: pfam
Location: 23173 - 23529 (-)
Gene ID: PH505_ap00600
Type: CAZyme
Location: 23533 - 24744 (-)
Type: CAZyme
Location: 23533 - 24744 (-)
Gene ID: PH505_ap00610
Type: CAZyme
Location: 24855 - 27404 (-)
Type: CAZyme
Location: 24855 - 27404 (-)
Gene ID: PH505_ap00620
Type: pfam
Location: 27454 - 28902 (-)
Type: pfam
Location: 27454 - 28902 (-)
Gene ID: PH505_ap00630
Type: pfam
Location: 28995 - 29618 (-)
Type: pfam
Location: 28995 - 29618 (-)
Gene ID: PH505_ap00640
Type: CAZyme
Location: 29632 - 31104 (-)
Type: CAZyme
Location: 29632 - 31104 (-)
Gene ID: PH505_ap00650
Type: null
Location: 31347 - 31481 (-)
Type: null
Location: 31347 - 31481 (-)
Gene ID: PH505_ap00660
Type: pfam
Location: 31490 - 32014 (-)
Type: pfam
Location: 31490 - 32014 (-)
Gene ID: PH505_ap00670
Type: TC
Location: 32503 - 35217 (-)
Type: TC
Location: 32503 - 35217 (-)
Gene ID: PH505_ap00680
Type: CAZyme
Location: 35638 - 36396 (+)
Type: CAZyme
Location: 35638 - 36396 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Pseudoalteromonadaceae
Genus
Pseudoalteromonas
Species
Pseudoalteromonas haloplanktis
Gene Composition
Loading chart...
← Back to Cluster List