Cluster: PUL0135
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: PUL0135
- CGC Family ID: CGCFAM_04135
- Continent: NA
- Source Study: dbCAN-PUL Database →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MH687413 | CE12 | 1 | 771 | - | CE12 |
| TC | MH687413 | AYK02488.1 | 1336 | 4365 | + | 1.B.14.12.1 |
| NULL(UNKNOWN) | MH687413 | AYK02489.1 | 4368 | 4493 | + | NULL(UNKNOWN) |
| CAZyme | MH687413 | GH28 | 4584 | 6053 | + | GH28 |
| pfam | MH687413 | KdgA | 6068 | 6697 | + | Aldolase |
| pfam | MH687413 | UxaC | 6762 | 8207 | + | UxaC |
| CAZyme | MH687413 | GH105A | 8265 | 10817 | + | GH105 |
| CAZyme | MH687413 | GH105B | 10847 | 12040 | + | GH105 |
| CAZyme | MH687413 | GH43 | 12050 | 13735 | + | CBM91 | GH43_10 |
| peptidase | MH687413 | CE10 | 13738 | 14688 | + | S09.UNW |
| TF | MH687413 | AYK02492.1 | 14860 | 15876 | - | LacI |
| TC | MH687413 | DctM | 16140 | 17441 | - | 2.A.56.1.5 |
| TC | MH687413 | DctQ | 17441 | 17932 | - | 2.A.56.1.5 |
| TC | MH687413 | SBP | 17939 | 18937 | - | 2.A.56.1.5 |
| pfam | MH687413 | KduI | 18967 | 19809 | - | KduI |
| pfam | MH687413 | KduD | 19831 | 20595 | - | adh_short | KR | adh_short_C2 |
| pfam | MH687413 | UxaB | 20727 | 22229 | + | Mannitol_dh | Mannitol_dh_C |
| pfam | MH687413 | UxaA | 22231 | 23718 | + | GD_AH_second | SAF | GD_AH_C |
| STP | MH687413 | KdgK | 23719 | 24669 | + | PfkB |
| CAZyme | MH687413 | CE8 | 24762 | 25718 | + | CE8 |
| CAZyme | MH687413 | PL1 | 25735 | 27138 | + | PL1_2 |
Gene ID: CE12
Type: CAZyme
Location: 1 - 771 (-)
Type: CAZyme
Location: 1 - 771 (-)
Gene ID: AYK02488.1
Type: TC
Location: 1336 - 4365 (+)
Type: TC
Location: 1336 - 4365 (+)
Gene ID: AYK02489.1
Type: null
Location: 4368 - 4493 (+)
Type: null
Location: 4368 - 4493 (+)
Gene ID: GH28
Type: CAZyme
Location: 4584 - 6053 (+)
Type: CAZyme
Location: 4584 - 6053 (+)
Gene ID: KdgA
Type: pfam
Location: 6068 - 6697 (+)
Type: pfam
Location: 6068 - 6697 (+)
Gene ID: UxaC
Type: pfam
Location: 6762 - 8207 (+)
Type: pfam
Location: 6762 - 8207 (+)
Gene ID: GH105A
Type: CAZyme
Location: 8265 - 10817 (+)
Type: CAZyme
Location: 8265 - 10817 (+)
Gene ID: GH105B
Type: CAZyme
Location: 10847 - 12040 (+)
Type: CAZyme
Location: 10847 - 12040 (+)
Gene ID: GH43
Type: CAZyme
Location: 12050 - 13735 (+)
Type: CAZyme
Location: 12050 - 13735 (+)
Gene ID: CE10
Type: peptidase
Location: 13738 - 14688 (+)
Type: peptidase
Location: 13738 - 14688 (+)
Gene ID: AYK02492.1
Type: TF
Location: 14860 - 15876 (-)
Type: TF
Location: 14860 - 15876 (-)
Gene ID: DctM
Type: TC
Location: 16140 - 17441 (-)
Type: TC
Location: 16140 - 17441 (-)
Gene ID: DctQ
Type: TC
Location: 17441 - 17932 (-)
Type: TC
Location: 17441 - 17932 (-)
Gene ID: SBP
Type: TC
Location: 17939 - 18937 (-)
Type: TC
Location: 17939 - 18937 (-)
Gene ID: KduI
Type: pfam
Location: 18967 - 19809 (-)
Type: pfam
Location: 18967 - 19809 (-)
Gene ID: KduD
Type: pfam
Location: 19831 - 20595 (-)
Type: pfam
Location: 19831 - 20595 (-)
Gene ID: UxaB
Type: pfam
Location: 20727 - 22229 (+)
Type: pfam
Location: 20727 - 22229 (+)
Gene ID: UxaA
Type: pfam
Location: 22231 - 23718 (+)
Type: pfam
Location: 22231 - 23718 (+)
Gene ID: KdgK
Type: STP
Location: 23719 - 24669 (+)
Type: STP
Location: 23719 - 24669 (+)
Gene ID: CE8
Type: CAZyme
Location: 24762 - 25718 (+)
Type: CAZyme
Location: 24762 - 25718 (+)
Gene ID: PL1
Type: CAZyme
Location: 25735 - 27138 (+)
Type: CAZyme
Location: 25735 - 27138 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Alteromonadales
Family
Pseudoalteromonadaceae
Genus
Pseudoalteromonas
Species
Pseudoalteromonas sp.
Gene Composition
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