Cluster: PUL0053_HRGMv2_3789_C0
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate: alginate
- Genome ID: HRGMv2_3789
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| pfam | PUL0053_HRGMv2_3789_C0 | HRGMv2_3789_7_66 | 66050 | 67237 | - | Lipase_GDSL | Lipase_GDSL_2 |
| pfam | PUL0053_HRGMv2_3789_C0 | HRGMv2_3789_7_67 | 67259 | 68011 | - | adh_short | KR | adh_short_C2 |
| TC | PUL0053_HRGMv2_3789_C0 | HRGMv2_3789_7_68 | 68054 | 69358 | - | 2.A.1.14.25 |
| CAZyme | PUL0053_HRGMv2_3789_C0 | HRGMv2_3789_7_69 | 69355 | 71583 | - | PL17 | PL17_2 |
| CAZyme | PUL0053_HRGMv2_3789_C0 | HRGMv2_3789_7_70 | 71580 | 73019 | - | PL6 |
| pfam | PUL0053_HRGMv2_3789_C0 | HRGMv2_3789_7_71 | 73261 | 76152 | + | TonB_dep_Rec_b-barrel | Plug |
| TF | PUL0053_HRGMv2_3789_C0 | HRGMv2_3789_7_72 | 76255 | 76998 | + | GntR |
| NULL(UNKNOWN) | PUL0053_HRGMv2_3789_C0 | HRGMv2_3789_7_73 | 77116 | 78882 | + | NULL(UNKNOWN) |
Gene ID: HRGMv2_3789_7_66
Type: pfam
Location: 66050 - 67237 (-)
Type: pfam
Location: 66050 - 67237 (-)
Gene ID: HRGMv2_3789_7_67
Type: pfam
Location: 67259 - 68011 (-)
Type: pfam
Location: 67259 - 68011 (-)
Gene ID: HRGMv2_3789_7_68
Type: TC
Location: 68054 - 69358 (-)
Type: TC
Location: 68054 - 69358 (-)
Gene ID: HRGMv2_3789_7_69
Type: CAZyme
Location: 69355 - 71583 (-)
Type: CAZyme
Location: 69355 - 71583 (-)
Gene ID: HRGMv2_3789_7_70
Type: CAZyme
Location: 71580 - 73019 (-)
Type: CAZyme
Location: 71580 - 73019 (-)
Gene ID: HRGMv2_3789_7_71
Type: pfam
Location: 73261 - 76152 (+)
Type: pfam
Location: 73261 - 76152 (+)
Gene ID: HRGMv2_3789_7_72
Type: TF
Location: 76255 - 76998 (+)
Type: TF
Location: 76255 - 76998 (+)
Gene ID: HRGMv2_3789_7_73
Type: null
Location: 77116 - 78882 (+)
Type: null
Location: 77116 - 78882 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Xanthomonadales
Family
Xanthomonadaceae
Genus
Stenotrophomonas
Species
Stenotrophomonas maltophilia
Gene Composition
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