Cluster: PUL0028
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: PUL0028
- Continent: NA
- Source Study: dbCAN-PUL Database →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TF | NZ_AAYG02000020 | RUMGNA_RS11830 | 1 | 405 | + | MerR |
| pfam | NZ_AAYG02000020 | RUMGNA_RS11835 | 532 | 1428 | - | ROK |
| pfam | NZ_AAYG02000020 | RUMGNA_RS11840 | 1578 | 2495 | - | DHDPS |
| pfam | NZ_AAYG02000020 | RUMGNA_RS11845 | 2543 | 3232 | - | NanE |
| CAZyme | NZ_AAYG02000020 | RUMGNA_RS11850 | 3343 | 5514 | - | CBM40 | GH33 |
| CAZyme | NZ_AAYG02000020 | RUMGNA_RS11855 | 5511 | 6635 | - | GH177 |
| TC | NZ_AAYG02000020 | RUMGNA_RS11860 | 6657 | 7490 | - | 3.A.1.1.25 |
| TC | NZ_AAYG02000020 | RUMGNA_RS11865 | 7490 | 8377 | - | 3.A.1.1.25 |
| STP | NZ_AAYG02000020 | RUMGNA_RS11870 | 8426 | 9763 | - | SBP_bac_1 |
| TF | NZ_AAYG02000020 | RUMGNA_RS11875 | 9915 | 10763 | - | HTH_AraC | HTH_AraC |
| pfam | NZ_AAYG02000020 | RUMGNA_RS11880 | 10906 | 11355 | - | DUF386 |
| pfam | NZ_AAYG02000020 | RUMGNA_RS11885 | 11371 | 12081 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | NZ_AAYG02000020 | RUMGNA_RS11890 | 12707 | 13429 | - | GH1 |
| CAZyme | NZ_AAYG02000020 | RUMGNA_RS11895 | 13414 | 13429 | - | GH140 |
Gene ID: RUMGNA_RS11830
Type: TF
Location: 1 - 405 (+)
Type: TF
Location: 1 - 405 (+)
Gene ID: RUMGNA_RS11835
Type: pfam
Location: 532 - 1428 (-)
Type: pfam
Location: 532 - 1428 (-)
Gene ID: RUMGNA_RS11840
Type: pfam
Location: 1578 - 2495 (-)
Type: pfam
Location: 1578 - 2495 (-)
Gene ID: RUMGNA_RS11845
Type: pfam
Location: 2543 - 3232 (-)
Type: pfam
Location: 2543 - 3232 (-)
Gene ID: RUMGNA_RS11850
Type: CAZyme
Location: 3343 - 5514 (-)
Type: CAZyme
Location: 3343 - 5514 (-)
Gene ID: RUMGNA_RS11855
Type: CAZyme
Location: 5511 - 6635 (-)
Type: CAZyme
Location: 5511 - 6635 (-)
Gene ID: RUMGNA_RS11860
Type: TC
Location: 6657 - 7490 (-)
Type: TC
Location: 6657 - 7490 (-)
Gene ID: RUMGNA_RS11865
Type: TC
Location: 7490 - 8377 (-)
Type: TC
Location: 7490 - 8377 (-)
Gene ID: RUMGNA_RS11870
Type: STP
Location: 8426 - 9763 (-)
Type: STP
Location: 8426 - 9763 (-)
Gene ID: RUMGNA_RS11875
Type: TF
Location: 9915 - 10763 (-)
Type: TF
Location: 9915 - 10763 (-)
Gene ID: RUMGNA_RS11880
Type: pfam
Location: 10906 - 11355 (-)
Type: pfam
Location: 10906 - 11355 (-)
Gene ID: RUMGNA_RS11885
Type: pfam
Location: 11371 - 12081 (-)
Type: pfam
Location: 11371 - 12081 (-)
Gene ID: RUMGNA_RS11890
Type: CAZyme
Location: 12707 - 13429 (-)
Type: CAZyme
Location: 12707 - 13429 (-)
Gene ID: RUMGNA_RS11895
Type: CAZyme
Location: 13414 - 13429 (-)
Type: CAZyme
Location: 13414 - 13429 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter gnavus
Gene Composition
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