Cluster: PUL0012
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate: chitin
- Genome ID: PUL0012
- CGC Family ID: CGCFAM_04153
- Continent: NA
- Source Study: dbCAN-PUL Database →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| pfam | NC_002505 | VC_RS03095 | 1 | 1413 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | NC_002505 | VC_RS03100 | 1536 | 3941 | - | GH94 |
| CAZyme | NC_002505 | VC_RS03105 | 4060 | 5973 | - | GH20 |
| pfam | NC_002505 | VC_RS03110 | 5970 | 6854 | - | BcrAD_BadFG |
| CAZyme | NC_002505 | VC_RS03115 | 6851 | 8575 | - | GH9 |
| TC | NC_002505 | VC_RS03120 | 8632 | 9627 | - | 3.A.1.5.20 |
| TC | NC_002505 | VC_RS03125 | 9670 | 10653 | - | 3.A.1.5.15 |
| TC | NC_002505 | VC_RS03130 | 10656 | 11681 | - | 3.A.1.5.14 |
| TC | NC_002505 | VC_RS03135 | 11684 | 12670 | - | 3.A.1.5.16 |
| TC | NC_002505 | VC_RS03140 | 12840 | 14510 | - | 3.A.1.5.7 |
| STP | NC_002505 | VC_RS03145 | 15421 | 18810 | - | HATPase_c | HisKA | PAS | Response_reg |
Gene ID: VC_RS03095
Type: pfam
Location: 1 - 1413 (-)
Type: pfam
Location: 1 - 1413 (-)
Gene ID: VC_RS03100
Type: CAZyme
Location: 1536 - 3941 (-)
Type: CAZyme
Location: 1536 - 3941 (-)
Gene ID: VC_RS03105
Type: CAZyme
Location: 4060 - 5973 (-)
Type: CAZyme
Location: 4060 - 5973 (-)
Gene ID: VC_RS03110
Type: pfam
Location: 5970 - 6854 (-)
Type: pfam
Location: 5970 - 6854 (-)
Gene ID: VC_RS03115
Type: CAZyme
Location: 6851 - 8575 (-)
Type: CAZyme
Location: 6851 - 8575 (-)
Gene ID: VC_RS03120
Type: TC
Location: 8632 - 9627 (-)
Type: TC
Location: 8632 - 9627 (-)
Gene ID: VC_RS03125
Type: TC
Location: 9670 - 10653 (-)
Type: TC
Location: 9670 - 10653 (-)
Gene ID: VC_RS03130
Type: TC
Location: 10656 - 11681 (-)
Type: TC
Location: 10656 - 11681 (-)
Gene ID: VC_RS03135
Type: TC
Location: 11684 - 12670 (-)
Type: TC
Location: 11684 - 12670 (-)
Gene ID: VC_RS03140
Type: TC
Location: 12840 - 14510 (-)
Type: TC
Location: 12840 - 14510 (-)
Gene ID: VC_RS03145
Type: STP
Location: 15421 - 18810 (-)
Type: STP
Location: 15421 - 18810 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Species
Vibrio cholerae
Gene Composition
Loading chart...
← Back to Cluster List