Cluster: MurphyR_2019_SRR7411406_bin.9_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411406_bin.9
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_229 | 273033 | 274202 | - | CE9 |
| STP | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_230 | 274320 | 275486 | - | SIS | SIS |
| TF | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_231 | 275600 | 276331 | - | GntR |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_232 | 276517 | 277599 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_233 | 277589 | 278389 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_234 | 278480 | 278962 | - | 4.A.6.1.4 |
| pfam | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_235 | 278999 | 279280 | - | YajC |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_236 | 279280 | 279723 | - | 4.A.6.1.16 |
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_229
Type: CAZyme
Location: 273033 - 274202 (-)
Type: CAZyme
Location: 273033 - 274202 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_230
Type: STP
Location: 274320 - 275486 (-)
Type: STP
Location: 274320 - 275486 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_231
Type: TF
Location: 275600 - 276331 (-)
Type: TF
Location: 275600 - 276331 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_232
Type: TC
Location: 276517 - 277599 (-)
Type: TC
Location: 276517 - 277599 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_233
Type: TC
Location: 277589 - 278389 (-)
Type: TC
Location: 277589 - 278389 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_234
Type: TC
Location: 278480 - 278962 (-)
Type: TC
Location: 278480 - 278962 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_235
Type: pfam
Location: 278999 - 279280 (-)
Type: pfam
Location: 278999 - 279280 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_236
Type: TC
Location: 279280 - 279723 (-)
Type: TC
Location: 279280 - 279723 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900550205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.