Cluster: MurphyR_2019_SRR7411406_bin.9_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7411406_bin.9
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_211 | 249811 | 250149 | - | 4.A.3.1.2 |
| TF | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_212 | 250364 | 251368 | - | LacI |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_213 | 251726 | 253501 | + | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_214 | 253568 | 255007 | + | GH1 |
| TF | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_215 | 255277 | 256314 | - | LacI |
| CAZyme | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_216 | 256656 | 258098 | + | GH1 |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_217 | 258277 | 260037 | + | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_218 | 260211 | 261221 | - | LacI |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_219 | 261497 | 263275 | + | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_220 | 263351 | 264772 | + | GH1 |
| TF | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_221 | 265347 | 266111 | - | HTH_DeoR |
| sulfatase | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_222 | 266318 | 267370 | + | S1_4 |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_223 | 267694 | 268176 | - | 4.A.6.1.5 |
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_211
Type: TC
Location: 249811 - 250149 (-)
Type: TC
Location: 249811 - 250149 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_212
Type: TF
Location: 250364 - 251368 (-)
Type: TF
Location: 250364 - 251368 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_213
Type: TC
Location: 251726 - 253501 (+)
Type: TC
Location: 251726 - 253501 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_214
Type: CAZyme
Location: 253568 - 255007 (+)
Type: CAZyme
Location: 253568 - 255007 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_215
Type: TF
Location: 255277 - 256314 (-)
Type: TF
Location: 255277 - 256314 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_216
Type: CAZyme
Location: 256656 - 258098 (+)
Type: CAZyme
Location: 256656 - 258098 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_217
Type: TC
Location: 258277 - 260037 (+)
Type: TC
Location: 258277 - 260037 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_218
Type: TF
Location: 260211 - 261221 (-)
Type: TF
Location: 260211 - 261221 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_219
Type: TC
Location: 261497 - 263275 (+)
Type: TC
Location: 261497 - 263275 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_220
Type: CAZyme
Location: 263351 - 264772 (+)
Type: CAZyme
Location: 263351 - 264772 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_221
Type: TF
Location: 265347 - 266111 (-)
Type: TF
Location: 265347 - 266111 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_222
Type: sulfatase
Location: 266318 - 267370 (+)
Type: sulfatase
Location: 266318 - 267370 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_223
Type: TC
Location: 267694 - 268176 (-)
Type: TC
Location: 267694 - 268176 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900550205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.