Cluster: MurphyR_2019_SRR7411406_bin.9_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411406_bin.9
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_53 | 56645 | 58021 | - | GH13_20 |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_54 | 58175 | 59371 | - | 2.A.1.2.18 |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_55 | 59497 | 61857 | - | 9.A.8.1.6 |
| pfam | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_56 | 62318 | 63541 | + | Zn_Ribbon_1 |
| peptidase | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_57 | 63814 | 64716 | - | S09.UPW |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_58 | 64961 | 65524 | + | 4.A.1.2.6 |
| TC | MurphyR_2019_SRR7411406_bin.9_k141_13295 | MurphyR_2019_SRR7411406_bin.9_k141_13295_59 | 65760 | 67679 | + | 9.B.97.5.1 |
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_53
Type: CAZyme
Location: 56645 - 58021 (-)
Type: CAZyme
Location: 56645 - 58021 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_54
Type: TC
Location: 58175 - 59371 (-)
Type: TC
Location: 58175 - 59371 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_55
Type: TC
Location: 59497 - 61857 (-)
Type: TC
Location: 59497 - 61857 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_56
Type: pfam
Location: 62318 - 63541 (+)
Type: pfam
Location: 62318 - 63541 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_57
Type: peptidase
Location: 63814 - 64716 (-)
Type: peptidase
Location: 63814 - 64716 (-)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_58
Type: TC
Location: 64961 - 65524 (+)
Type: TC
Location: 64961 - 65524 (+)
Gene ID: MurphyR_2019_SRR7411406_bin.9_k141_13295_59
Type: TC
Location: 65760 - 67679 (+)
Type: TC
Location: 65760 - 67679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900550205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7411406_bin.9_k141_13295_56 | vegetarian > vegan | 15.87200 | 0.00181 |
| MurphyR_2019_SRR7411406_bin.9_k141_13295_59 | vegan > omnivore | 1.32194 | 0.01287 |