Cluster: MurphyR_2019_SRR7411401_bin.9_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: MurphyR_2019_SRR7411401_bin.9
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_58 | 60581 | 62002 | - | GH1 |
| TC | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_59 | 62079 | 63857 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_60 | 64133 | 65143 | + | LacI |
| TC | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_61 | 65557 | 67317 | - | 4.A.3.1.1 |
| CAZyme | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_62 | 67494 | 68936 | - | GH1 |
| TF | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_63 | 69278 | 70315 | + | LacI |
| CAZyme | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_64 | 70586 | 72025 | - | GH1 |
| TC | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_65 | 72092 | 73858 | - | 4.A.3.1.1 |
| TF | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_66 | 74217 | 75221 | + | LacI |
| TC | MurphyR_2019_SRR7411401_bin.9_k141_44174 | MurphyR_2019_SRR7411401_bin.9_k141_44174_67 | 75436 | 75678 | + | 4.A.3.1.2 |
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_58
Type: CAZyme
Location: 60581 - 62002 (-)
Type: CAZyme
Location: 60581 - 62002 (-)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_59
Type: TC
Location: 62079 - 63857 (-)
Type: TC
Location: 62079 - 63857 (-)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_60
Type: TF
Location: 64133 - 65143 (+)
Type: TF
Location: 64133 - 65143 (+)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_61
Type: TC
Location: 65557 - 67317 (-)
Type: TC
Location: 65557 - 67317 (-)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_62
Type: CAZyme
Location: 67494 - 68936 (-)
Type: CAZyme
Location: 67494 - 68936 (-)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_63
Type: TF
Location: 69278 - 70315 (+)
Type: TF
Location: 69278 - 70315 (+)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_64
Type: CAZyme
Location: 70586 - 72025 (-)
Type: CAZyme
Location: 70586 - 72025 (-)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_65
Type: TC
Location: 72092 - 73858 (-)
Type: TC
Location: 72092 - 73858 (-)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_66
Type: TF
Location: 74217 - 75221 (+)
Type: TF
Location: 74217 - 75221 (+)
Gene ID: MurphyR_2019_SRR7411401_bin.9_k141_44174_67
Type: TC
Location: 75436 - 75678 (+)
Type: TC
Location: 75436 - 75678 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7411401_bin.9_k141_44174_63 | vegetarian > omnivore | 1.02083 | 0.03181 |