Cluster: MurphyR_2019_SRR7411400_bin.18_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411400_bin.18
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_77 | 90307 | 91707 | + | GH1 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_78 | 91828 | 93171 | + | 4.A.3.2.9 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_79 | 93330 | 93632 | + | 4.A.3.2.9 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_80 | 93642 | 93974 | + | 4.A.3.2.3 |
| STP | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_81 | 94216 | 95169 | + | Glucokinase |
| pfam | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_82 | 95335 | 96258 | + | DHH | DHHA2 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_83 | 96527 | 97885 | + | 2.A.33.1.1 |
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_77
Type: CAZyme
Location: 90307 - 91707 (+)
Type: CAZyme
Location: 90307 - 91707 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_78
Type: TC
Location: 91828 - 93171 (+)
Type: TC
Location: 91828 - 93171 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_79
Type: TC
Location: 93330 - 93632 (+)
Type: TC
Location: 93330 - 93632 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_80
Type: TC
Location: 93642 - 93974 (+)
Type: TC
Location: 93642 - 93974 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_81
Type: STP
Location: 94216 - 95169 (+)
Type: STP
Location: 94216 - 95169 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_82
Type: pfam
Location: 95335 - 96258 (+)
Type: pfam
Location: 95335 - 96258 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_83
Type: TC
Location: 96527 - 97885 (+)
Type: TC
Location: 96527 - 97885 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7411400_bin.18_k141_15211_79 | vegan > omnivore | 1.05114 | 0.00701 |