Cluster: MurphyR_2019_SRR7411400_bin.18_CGC7
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7411400_bin.18
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_11 | 14951 | 17401 | - | 4.A.1.1.8 |
| TF | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_12 | 17631 | 18350 | + | GntR |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_13 | 18657 | 19973 | + | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_14 | 20061 | 20915 | + | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_15 | 20915 | 21754 | + | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_16 | 21823 | 23022 | + | 3.A.1.1.22 |
| CAZyme | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_17 | 23558 | 25825 | - | GT35 |
| CAZyme | MurphyR_2019_SRR7411400_bin.18_k141_15211 | MurphyR_2019_SRR7411400_bin.18_k141_15211_18 | 25954 | 27459 | - | GH77 |
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_11
Type: TC
Location: 14951 - 17401 (-)
Type: TC
Location: 14951 - 17401 (-)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_12
Type: TF
Location: 17631 - 18350 (+)
Type: TF
Location: 17631 - 18350 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_13
Type: TC
Location: 18657 - 19973 (+)
Type: TC
Location: 18657 - 19973 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_14
Type: TC
Location: 20061 - 20915 (+)
Type: TC
Location: 20061 - 20915 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_15
Type: TC
Location: 20915 - 21754 (+)
Type: TC
Location: 20915 - 21754 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_16
Type: TC
Location: 21823 - 23022 (+)
Type: TC
Location: 21823 - 23022 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_17
Type: CAZyme
Location: 23558 - 25825 (-)
Type: CAZyme
Location: 23558 - 25825 (-)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_15211_18
Type: CAZyme
Location: 25954 - 27459 (-)
Type: CAZyme
Location: 25954 - 27459 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.