Cluster: MurphyR_2019_SRR7411400_bin.18_CGC2
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7411400_bin.18
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_1 | 3 | 554 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_2 | 547 | 1470 | - | 3.A.1.34.1 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_3 | 1674 | 2654 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_4 | 2815 | 3600 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_5 | 3859 | 5262 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_6 | 5444 | 6007 | - | 4.A.1.2.6 |
| peptidase | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_7 | 6251 | 7150 | + | S09.UPW |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_8 | 7623 | 9983 | + | 9.A.8.1.6 |
| TC | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_9 | 10104 | 11300 | + | 2.A.1.2.18 |
| CAZyme | MurphyR_2019_SRR7411400_bin.18_k141_5196 | MurphyR_2019_SRR7411400_bin.18_k141_5196_10 | 11455 | 12831 | + | GH13_20 |
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_1
Type: TC
Location: 3 - 554 (-)
Type: TC
Location: 3 - 554 (-)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_2
Type: TC
Location: 547 - 1470 (-)
Type: TC
Location: 547 - 1470 (-)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_3
Type: TC
Location: 1674 - 2654 (-)
Type: TC
Location: 1674 - 2654 (-)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_4
Type:
Location: 2815 - 3600 (-)
Type:
Location: 2815 - 3600 (-)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_5
Type: pfam
Location: 3859 - 5262 (-)
Type: pfam
Location: 3859 - 5262 (-)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_6
Type: TC
Location: 5444 - 6007 (-)
Type: TC
Location: 5444 - 6007 (-)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_7
Type: peptidase
Location: 6251 - 7150 (+)
Type: peptidase
Location: 6251 - 7150 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_8
Type: TC
Location: 7623 - 9983 (+)
Type: TC
Location: 7623 - 9983 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_9
Type: TC
Location: 10104 - 11300 (+)
Type: TC
Location: 10104 - 11300 (+)
Gene ID: MurphyR_2019_SRR7411400_bin.18_k141_5196_10
Type: CAZyme
Location: 11455 - 12831 (+)
Type: CAZyme
Location: 11455 - 12831 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.